Joshi T - Search Results

1

Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit.

Wang J, Sidharth S, Zeng S, Jiang Y, Chan YO, Lyu Z, McCubbin T, Mertz R, Sharp RE, Joshi T. Wang J, et al. Among authors: joshi t. Physiol Plant. 2022 Mar;174(2):e13672. doi: 10.1111/ppl.13672. Physiol Plant. 2022. PMID: 35297059 Review.

2

Prediction of drought-resistant genes in Arabidopsis thaliana using SVM-RFE.

Liang Y, Zhang F, Wang J, Joshi T, Wang Y, Xu D. Liang Y, et al. Among authors: joshi t. PLoS One. 2011;6(7):e21750. doi: 10.1371/journal.pone.0021750. Epub 2011 Jul 15. PLoS One. 2011. PMID: 21789178 Free PMC article.

3

Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics.

Joshi T, Patil K, Fitzpatrick MR, Franklin LD, Yao Q, Cook JR, Wang Z, Libault M, Brechenmacher L, Valliyodan B, Wu X, Cheng J, Stacey G, Nguyen HT, Xu D. Joshi T, et al. BMC Genomics. 2012;13 Suppl 1(Suppl 1):S15. doi: 10.1186/1471-2164-13-S1-S15. Epub 2012 Jan 17. BMC Genomics. 2012. PMID: 22369646 Free PMC article.

4

A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies.

Wang J, Joshi T, Valliyodan B, Shi H, Liang Y, Nguyen HT, Zhang J, Xu D. Wang J, et al. Among authors: joshi t. BMC Genomics. 2015 Nov 25;16:1011. doi: 10.1186/s12864-015-2217-6. BMC Genomics. 2015. PMID: 26607428 Free PMC article.

5

RDF SKETCH MAPS - KNOWLEDGE COMPLEXITY REDUCTION FOR PRECISION MEDICINE ANALYTICS.

Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, Verma M, Joshi T, Hammer R, Xu D, Shin D. Thanintorn N, et al. Among authors: joshi t. Pac Symp Biocomput. 2016;21:417-28. Pac Symp Biocomput. 2016. PMID: 26776205 Free article.

6

PGen: large-scale genomic variations analysis workflow and browser in SoyKB.

Liu Y, Khan SM, Wang J, Rynge M, Zhang Y, Zeng S, Chen S, Maldonado Dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T. Liu Y, et al. Among authors: joshi t. BMC Bioinformatics. 2016 Oct 6;17(Suppl 13):337. doi: 10.1186/s12859-016-1227-y. BMC Bioinformatics. 2016. PMID: 27766951 Free PMC article.

7

The Evolution of Soybean Knowledge Base (SoyKB).

Joshi T, Wang J, Zhang H, Chen S, Zeng S, Xu B, Xu D. Joshi T, et al. Methods Mol Biol. 2017;1533:149-159. doi: 10.1007/978-1-4939-6658-5_7. Methods Mol Biol. 2017. PMID: 27987168

8

Water-deficit-induced changes in transcription factor expression in maize seedlings.

Seeve CM, Cho IJ, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ. Seeve CM, et al. Among authors: joshi t. Plant Cell Environ. 2017 May;40(5):686-701. doi: 10.1111/pce.12891. Epub 2017 Jan 20. Plant Cell Environ. 2017. PMID: 28039925 Free article.

9

MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction.

Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D. Wang D, et al. Among authors: joshi t. Bioinformatics. 2017 Dec 15;33(24):3909-3916. doi: 10.1093/bioinformatics/btx496. Bioinformatics. 2017. PMID: 29036382 Free PMC article.

10

Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection.

Majumder K, Wang J, Boftsi M, Fuller MS, Rede JE, Joshi T, Pintel DJ. Majumder K, et al. Among authors: joshi t. Elife. 2018 Jul 20;7:e37750. doi: 10.7554/eLife.37750. Elife. 2018. PMID: 30028293 Free PMC article.

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