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Comparison of Prompt Engineering and Fine-Tuning Strategies in Large Language Models in the Classification of Clinical Notes.
Zhang X, Talukdar N, Vemulapalli S, Ahn S, Wang J, Meng H, Murtaza SMB, Leshchiner D, Dave AA, Joseph DF, Witteveen-Lane M, Chesla D, Zhou J, Chen B. Zhang X, et al. Among authors: joseph df. medRxiv [Preprint]. 2024 Feb 8:2024.02.07.24302444. doi: 10.1101/2024.02.07.24302444. medRxiv. 2024. PMID: 38370673 Free PMC article. Preprint.
Metagenomic and bile acid metabolomic analysis of fecal microbiota transplantation for recurrent Clostridiodes difficile and/or inflammatory bowel diseases.
Ramos RJ, Zhu C, Joseph DF, Thaker S, Lacomb JF, Markarian K, Lee HJ, Petrov JC, Monzur F, Buscaglia JM, Chawla A, Small-Harary L, Gathungu G, Morganstern JA, Yang J, Li J, Pamer EG, Robertson CE, Frank DN, Cross JR, Li E. Ramos RJ, et al. Among authors: joseph df. Med Res Arch. 2022 Oct 31;10(10):10.18103/mra.v10i10.3318. doi: 10.18103/mra.v10i10.3318. Med Res Arch. 2022. PMID: 36618438 Free PMC article.
Structural and functional basis of mammalian microRNA biogenesis by Dicer.
Zapletal D, Taborska E, Pasulka J, Malik R, Kubicek K, Zanova M, Much C, Sebesta M, Buccheri V, Horvat F, Jenickova I, Prochazkova M, Prochazka J, Pinkas M, Novacek J, Joseph DF, Sedlacek R, Bernecky C, O'Carroll D, Stefl R, Svoboda P. Zapletal D, et al. Among authors: joseph df. Mol Cell. 2022 Nov 3;82(21):4064-4079.e13. doi: 10.1016/j.molcel.2022.10.010. Mol Cell. 2022. PMID: 36332606 Free PMC article.
DNA aptamers for the recognition of HMGB1 from Plasmodium falciparum.
Joseph DF, Nakamoto JA, Garcia Ruiz OA, Peñaranda K, Sanchez-Castro AE, Castillo PS, Milón P. Joseph DF, et al. PLoS One. 2019 Apr 9;14(4):e0211756. doi: 10.1371/journal.pone.0211756. eCollection 2019. PLoS One. 2019. PMID: 30964875 Free PMC article.