Jordan IK - Search Results

1

QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.

Ssekagiri A, Jjingo D, Lujumba I, Bbosa N, Bugembe DL, Kateete DP, Jordan IK, Kaleebu P, Ssemwanga D. Ssekagiri A, et al. Among authors: jordan ik. Bioinform Adv. 2022 Nov 28;2(1):vbac089. doi: 10.1093/bioadv/vbac089. eCollection 2022. Bioinform Adv. 2022. PMID: 36699347 Free PMC article.

2

Effect of the transposable element environment of human genes on gene length and expression.

Jjingo D, Huda A, Gundapuneni M, Mariño-Ramírez L, Jordan IK. Jjingo D, et al. Among authors: jordan ik. Genome Biol Evol. 2011;3:259-71. doi: 10.1093/gbe/evr015. Epub 2011 Feb 28. Genome Biol Evol. 2011. PMID: 21362639 Free PMC article.

3

Prediction of transposable element derived enhancers using chromatin modification profiles.

Huda A, Tyagi E, Mariño-Ramírez L, Bowen NJ, Jjingo D, Jordan IK. Huda A, et al. Among authors: jordan ik. PLoS One. 2011;6(11):e27513. doi: 10.1371/journal.pone.0027513. Epub 2011 Nov 7. PLoS One. 2011. PMID: 22087331 Free PMC article.

4

On the presence and role of human gene-body DNA methylation.

Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK. Jjingo D, et al. Among authors: jordan ik. Oncotarget. 2012 Apr;3(4):462-74. doi: 10.18632/oncotarget.497. Oncotarget. 2012. PMID: 22577155 Free PMC article.

5

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome.

Jjingo D, Wang J, Conley AB, Lunyak VV, Jordan IK. Jjingo D, et al. Among authors: jordan ik. Bioinformatics. 2013 Dec 15;29(24):3109-12. doi: 10.1093/bioinformatics/btt542. Epub 2013 Oct 1. Bioinformatics. 2013. PMID: 24085569 Free PMC article.

6

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression.

Jjingo D, Conley AB, Wang J, Mariño-Ramírez L, Lunyak VV, Jordan IK. Jjingo D, et al. Among authors: jordan ik. Mob DNA. 2014 May 5;5:14. doi: 10.1186/1759-8753-5-14. eCollection 2014. Mob DNA. 2014. PMID: 25018785 Free PMC article.

7

A computational genomics pipeline for prokaryotic sequencing projects.

Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, Jordan IK. Kislyuk AO, et al. Among authors: jordan ik. Bioinformatics. 2010 Aug 1;26(15):1819-26. doi: 10.1093/bioinformatics/btq284. Epub 2010 Jun 2. Bioinformatics. 2010. PMID: 20519285 Free PMC article.

8

A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags.

Wang J, Huda A, Lunyak VV, Jordan IK. Wang J, et al. Among authors: jordan ik. Bioinformatics. 2010 Oct 15;26(20):2501-8. doi: 10.1093/bioinformatics/btq460. Epub 2010 Sep 24. Bioinformatics. 2010. PMID: 20871106 Free PMC article.

9

Transcriptional activity, chromosomal distribution and expression effects of transposable elements in Coffea genomes.

Lopes FR, Jjingo D, da Silva CR, Andrade AC, Marraccini P, Teixeira JB, Carazzolle MF, Pereira GA, Pereira LF, Vanzela AL, Wang L, Jordan IK, Carareto CM. Lopes FR, et al. Among authors: jordan ik. PLoS One. 2013 Nov 11;8(11):e78931. doi: 10.1371/journal.pone.0078931. eCollection 2013. PLoS One. 2013. PMID: 24244387 Free PMC article.

10

Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis.

Dunn J, Qiu H, Kim S, Jjingo D, Hoffman R, Kim CW, Jang I, Son DJ, Kim D, Pan C, Fan Y, Jordan IK, Jo H. Dunn J, et al. Among authors: jordan ik. J Clin Invest. 2014 Jul;124(7):3187-99. doi: 10.1172/JCI74792. Epub 2014 May 27. J Clin Invest. 2014. PMID: 24865430 Free PMC article.

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