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Population-size history inferences from the coho salmon (Oncorhynchus kisutch) genome.
Rondeau EB, Christensen KA, Minkley DR, Leong JS, Chan MTT, Despins CA, Mueller A, Sakhrani D, Biagi CA, Rougemont Q, Normandeau E, Jones SJM, Devlin RH, Withler RE, Beacham TD, Naish KA, Yáñez JM, Neira R, Bernatchez L, Davidson WS, Koop BF. Rondeau EB, et al. Among authors: jones sjm. G3 (Bethesda). 2023 Apr 11;13(4):jkad033. doi: 10.1093/g3journal/jkad033. G3 (Bethesda). 2023. PMID: 36759939 Free PMC article.
Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.
Lo T, Coombe L, Gagalova KK, Marr A, Warren RL, Kirk H, Pandoh P, Zhao Y, Moore RA, Mungall AJ, Ritland C, Pavy N, Jones SJM, Bohlmann J, Bousquet J, Birol I, Thomson A. Lo T, et al. Among authors: jones sjm. G3 (Bethesda). 2023 Dec 29;14(1):jkad247. doi: 10.1093/g3journal/jkad247. G3 (Bethesda). 2023. PMID: 37875130 Free PMC article.
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758.
Chang G, Jones S, Leelakumari S, Ashkani J, Culibrk L, O'Neill K, Tse K, Cheng D, Chuah E, McDonald H, Kirk H, Pandoh P, Pari S, Angelini V, Kyle C, Bertorelle G, Zhao Y, Mungall A, Moore R, Vilaça S, Jones S. Chang G, et al. F1000Res. 2023 Jun 27;12:336. doi: 10.12688/f1000research.131283.2. eCollection 2023. F1000Res. 2023. PMID: 37455852 Free PMC article.
Establishing association between HLA-C*04:01 and severe COVID-19.
Warren RL, Abraham R, Calingo M, Garant JM, Jones SJM, Birol I; CGEn HostSeq Initiative. Warren RL, et al. Among authors: jones sjm. HLA. 2024 Jan;103(1):e15355. doi: 10.1111/tan.15355. HLA. 2024. PMID: 38273454 No abstract available.
A new quinoline-based chemical probe inhibits the autophagy-related cysteine protease ATG4B.
Bosc D, Vezenkov L, Bortnik S, An J, Xu J, Choutka C, Hannigan AM, Kovacic S, Loo S, Clark PGK, Chen G, Guay-Ross RN, Yang K, Dragowska WH, Zhang F, Go NE, Leung A, Honson NS, Pfeifer TA, Gleave M, Bally M, Jones SJ, Gorski SM, Young RN. Bosc D, et al. Sci Rep. 2018 Aug 3;8(1):11653. doi: 10.1038/s41598-018-29900-x. Sci Rep. 2018. PMID: 30076329 Free PMC article.
Therapeutic Implication of Genomic Landscape of Adult Metastatic Sarcoma.
Feng X, Pleasance E, Zhao EY, Ng T, Grewal JK, Mohammad N, Taylor SK, Simmons C, Srikanthan A, Rassekh SR, Deyell R, Rauw J, Knowling M, Khoo K, Lee U, Noonan K, Hart J, Tonseth RP, Shen Y, Titmuss E, Jones M, Bonakdar M, Reisle C, Taylor GA, Chan S, Mungall K, Chuah E, Zhao Y, Mungall A, Moore R, Lim H, Renouf DJ, Gelmon K, Yip S, Jones SJM, Marra M, Laskin J. Feng X, et al. Among authors: jones m, jones sjm. JCO Precis Oncol. 2019 Dec;3:1-25. doi: 10.1200/PO.18.00325. JCO Precis Oncol. 2019. PMID: 35100702
The Integrated Genomic Landscape of Thymic Epithelial Tumors.
Radovich M, Pickering CR, Felau I, Ha G, Zhang H, Jo H, Hoadley KA, Anur P, Zhang J, McLellan M, Bowlby R, Matthew T, Danilova L, Hegde AM, Kim J, Leiserson MDM, Sethi G, Lu C, Ryan M, Su X, Cherniack AD, Robertson G, Akbani R, Spellman P, Weinstein JN, Hayes DN, Raphael B, Lichtenberg T, Leraas K, Zenklusen JC; Cancer Genome Atlas Network; Fujimoto J, Scapulatempo-Neto C, Moreira AL, Hwang D, Huang J, Marino M, Korst R, Giaccone G, Gokmen-Polar Y, Badve S, Rajan A, Ströbel P, Girard N, Tsao MS, Marx A, Tsao AS, Loehrer PJ. Radovich M, et al. Cancer Cell. 2018 Feb 12;33(2):244-258.e10. doi: 10.1016/j.ccell.2018.01.003. Cancer Cell. 2018. PMID: 29438696 Free PMC article.
Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers.
Deyell RJ, Shen Y, Titmuss E, Dixon K, Williamson LM, Pleasance E, Nelson JMT, Abbasi S, Krzywinski M, Armstrong L, Bonakdar M, Ch'ng C, Chuah E, Dunham C, Fok A, Jones M, Lee AF, Ma Y, Moore RA, Mungall AJ, Mungall KL, Rogers PC, Schrader KA, Virani A, Wee K, Young SS, Zhao Y, Jones SJM, Laskin J, Marra MA, Rassekh SR. Deyell RJ, et al. Among authors: jones sjm. Nat Commun. 2024 May 16;15(1):4165. doi: 10.1038/s41467-024-48363-5. Nat Commun. 2024. PMID: 38755180 Free PMC article.
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