Jones DC - Search Results

1

Characterization of Immunosuppressive Myeloid Cells in Merkel Cell Carcinoma: Correlation with Resistance to PD-1 Pathway Blockade.

Tabachnick-Cherny S, Pulliam T, Rodriguez HJ, Fan X, Hippe DS, Jones DC, Moshiri AS, Smythe KS, Kulikauskas RM, Zaba LC, Paulson KG, Nghiem P. Tabachnick-Cherny S, et al. Among authors: jones dc. Clin Cancer Res. 2024 Mar 15;30(6):1189-1199. doi: 10.1158/1078-0432.CCR-23-1957. Clin Cancer Res. 2024. PMID: 37851052

2

An information theoretic approach to detecting spatially varying genes.

Jones DC, Danaher P, Kim Y, Beechem JM, Gottardo R, Newell EW. Jones DC, et al. Cell Rep Methods. 2023 Jun 16;3(6):100507. doi: 10.1016/j.crmeth.2023.100507. eCollection 2023 Jun 26. Cell Rep Methods. 2023. PMID: 37426750 Free PMC article.

3

Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes.

Palpant NJ, Pabon L, Roberts M, Hadland B, Jones D, Jones C, Moon RT, Ruzzo WL, Bernstein I, Zheng Y, Murry CE. Palpant NJ, et al. Development. 2015 Sep 15;142(18):3198-209. doi: 10.1242/dev.117010. Epub 2015 Jul 7. Development. 2015. PMID: 26153229 Free PMC article.

4

Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis.

Palpant NJ, Wang Y, Hadland B, Zaunbrecher RJ, Redd M, Jones D, Pabon L, Jain R, Epstein J, Ruzzo WL, Zheng Y, Bernstein I, Margolin A, Murry CE. Palpant NJ, et al. Cell Rep. 2017 Aug 15;20(7):1597-1608. doi: 10.1016/j.celrep.2017.07.067. Cell Rep. 2017. PMID: 28813672 Free PMC article.

5

Metabolic Control over mTOR-Dependent Diapause-like State.

Hussein AM, Wang Y, Mathieu J, Margaretha L, Song C, Jones DC, Cavanaugh C, Miklas JW, Mahen E, Showalter MR, Ruzzo WL, Fiehn O, Ware CB, Blau CA, Ruohola-Baker H. Hussein AM, et al. Among authors: jones dc. Dev Cell. 2020 Jan 27;52(2):236-250.e7. doi: 10.1016/j.devcel.2019.12.018. Dev Cell. 2020. PMID: 31991105 Free PMC article.

6

Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes.

Kuppusamy KT, Jones DC, Sperber H, Madan A, Fischer KA, Rodriguez ML, Pabon L, Zhu WZ, Tulloch NL, Yang X, Sniadecki NJ, Laflamme MA, Ruzzo WL, Murry CE, Ruohola-Baker H. Kuppusamy KT, et al. Among authors: jones dc. Proc Natl Acad Sci U S A. 2015 May 26;112(21):E2785-94. doi: 10.1073/pnas.1424042112. Epub 2015 May 11. Proc Natl Acad Sci U S A. 2015. PMID: 25964336 Free PMC article.

7

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data.

Peng X, Pipes L, Xiong H, Green RR, Jones DC, Ruzzo WL, Schroth GP, Mason CE, Palermo RE, Katze MG. Peng X, et al. Among authors: jones dc. J Med Primatol. 2014 Oct;43(5):317-28. doi: 10.1111/jmp.12125. Epub 2014 May 8. J Med Primatol. 2014. PMID: 24810475 Free PMC article.

8

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

Jones DC, Ruzzo WL, Peng X, Katze MG. Jones DC, et al. Nucleic Acids Res. 2012 Dec;40(22):e171. doi: 10.1093/nar/gks754. Epub 2012 Aug 16. Nucleic Acids Res. 2012. PMID: 22904078 Free PMC article.

9

A new approach to bias correction in RNA-Seq.

Jones DC, Ruzzo WL, Peng X, Katze MG. Jones DC, et al. Bioinformatics. 2012 Apr 1;28(7):921-8. doi: 10.1093/bioinformatics/bts055. Epub 2012 Jan 28. Bioinformatics. 2012. PMID: 22285831 Free PMC article.

10

Cell Simulation as Cell Segmentation.

Jones DC, Elz AE, Hadadianpour A, Ryu H, Glass DR, Newell EW. Jones DC, et al. bioRxiv [Preprint]. 2024 Apr 28:2024.04.25.591218. doi: 10.1101/2024.04.25.591218. bioRxiv. 2024. PMID: 38712065 Free PMC article. Preprint.

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