Jones AR - Search Results

1

Assessing Multiple Evidence Streams to Decide on Confidence for Identification of Post-Translational Modifications, within and Across Data Sets.

Camacho OM, Ramsbottom KA, Collins A, Jones AR. Camacho OM, et al. Among authors: jones ar. J Proteome Res. 2023 Jun 2;22(6):1828-1842. doi: 10.1021/acs.jproteome.2c00823. Epub 2023 Apr 26. J Proteome Res. 2023. PMID: 37099386 Free PMC article.

2

ProteoAnnotator--open source proteogenomics annotation software supporting PSI standards.

Ghali F, Krishna R, Perkins S, Collins A, Xia D, Wastling J, Jones AR. Ghali F, et al. Among authors: jones ar. Proteomics. 2014 Dec;14(23-24):2731-41. doi: 10.1002/pmic.201400265. Epub 2014 Nov 19. Proteomics. 2014. PMID: 25297486

3

Evaluation of Parameters for Confident Phosphorylation Site Localization Using an Orbitrap Fusion Tribrid Mass Spectrometer.

Ferries S, Perkins S, Brownridge PJ, Campbell A, Eyers PA, Jones AR, Eyers CE. Ferries S, et al. Among authors: jones ar. J Proteome Res. 2017 Sep 1;16(9):3448-3459. doi: 10.1021/acs.jproteome.7b00337. Epub 2017 Aug 11. J Proteome Res. 2017. PMID: 28741359 Free article.

4

phpMs: A PHP-Based Mass Spectrometry Utilities Library.

Collins A, Jones AR. Collins A, et al. Among authors: jones ar. J Proteome Res. 2018 Mar 2;17(3):1309-1313. doi: 10.1021/acs.jproteome.7b00783. Epub 2018 Feb 13. J Proteome Res. 2018. PMID: 29400473

5

Critical assessment of approaches for molecular docking to elucidate associations of HLA alleles with adverse drug reactions.

Ramsbottom KA, Carr DF, Jones AR, Rigden DJ. Ramsbottom KA, et al. Among authors: jones ar. Mol Immunol. 2018 Sep;101:488-499. doi: 10.1016/j.molimm.2018.08.003. Epub 2018 Aug 18. Mol Immunol. 2018. PMID: 30125869 Free PMC article.

6

Proteome Bioinformatics Methods for Studying Histidine Phosphorylation.

Jones AR, Camacho OM. Jones AR, et al. Methods Mol Biol. 2020;2077:237-250. doi: 10.1007/978-1-4939-9884-5_16. Methods Mol Biol. 2020. PMID: 31707663

7

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools.

Gonzalez-Galarza FF, McCabe A, Santos EJMD, Jones J, Takeshita L, Ortega-Rivera ND, Cid-Pavon GMD, Ramsbottom K, Ghattaoraya G, Alfirevic A, Middleton D, Jones AR. Gonzalez-Galarza FF, et al. Among authors: jones ar, jones j. Nucleic Acids Res. 2020 Jan 8;48(D1):D783-D788. doi: 10.1093/nar/gkz1029. Nucleic Acids Res. 2020. PMID: 31722398 Free PMC article.

8

Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles.

Ramsbottom KA, Carr DF, Rigden DJ, Jones AR. Ramsbottom KA, et al. Among authors: jones ar. PLoS One. 2020 Feb 6;15(2):e0220754. doi: 10.1371/journal.pone.0220754. eCollection 2020. PLoS One. 2020. PMID: 32027661 Free PMC article.

9

mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.

Bhamber RS, Jankevics A, Deutsch EW, Jones AR, Dowsey AW. Bhamber RS, et al. Among authors: jones ar. J Proteome Res. 2021 Jan 1;20(1):172-183. doi: 10.1021/acs.jproteome.0c00192. Epub 2020 Oct 29. J Proteome Res. 2021. PMID: 32864978 Free PMC article.

10

lcmsWorld: High-Performance 3D Visualization Software for Mass Spectrometry.

McCabe A, Jones AR. McCabe A, et al. Among authors: jones ar. J Proteome Res. 2021 Apr 2;20(4):1981-1985. doi: 10.1021/acs.jproteome.0c00618. Epub 2021 Mar 12. J Proteome Res. 2021. PMID: 33710902

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