Jonassen I - Search Results

1

RASflow: an RNA-Seq analysis workflow with Snakemake.

Zhang X, Jonassen I. Zhang X, et al. Among authors: jonassen i. BMC Bioinformatics. 2020 Mar 18;21(1):110. doi: 10.1186/s12859-020-3433-x. BMC Bioinformatics. 2020. PMID: 32183729 Free PMC article.

2

XHM: a system for detection of potential cross hybridizations in DNA microarrays.

Flikka K, Yadetie F, Laegreid A, Jonassen I. Flikka K, et al. Among authors: jonassen i. BMC Bioinformatics. 2004 Aug 27;5:117. doi: 10.1186/1471-2105-5-117. BMC Bioinformatics. 2004. PMID: 15333145 Free PMC article.

3

TMM@: a web application for the analysis of transmembrane helix mobility.

Skjaerven L, Jonassen I, Reuter N. Skjaerven L, et al. Among authors: jonassen i. BMC Bioinformatics. 2007 Jul 2;8:232. doi: 10.1186/1471-2105-8-232. BMC Bioinformatics. 2007. PMID: 17601351 Free PMC article.

4

BioXSD: the common data-exchange format for everyday bioinformatics web services.

Kalas M, Puntervoll P, Joseph A, Bartaseviciūte E, Töpfer A, Venkataraman P, Pettifer S, Bryne JC, Ison J, Blanchet C, Rapacki K, Jonassen I. Kalas M, et al. Among authors: jonassen i. Bioinformatics. 2010 Sep 15;26(18):i540-6. doi: 10.1093/bioinformatics/btq391. Bioinformatics. 2010. PMID: 20823319 Free PMC article.

5

RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol.

Yadetie F, Zhang X, Hanna EM, Aranguren-Abadía L, Eide M, Blaser N, Brun M, Jonassen I, Goksøyr A, Karlsen OA. Yadetie F, et al. Among authors: jonassen i. Aquat Toxicol. 2018 Aug;201:174-186. doi: 10.1016/j.aquatox.2018.06.003. Epub 2018 Jun 7. Aquat Toxicol. 2018. PMID: 29929084

6

Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples.

Dimitrakopoulou K, Wik E, Akslen LA, Jonassen I. Dimitrakopoulou K, et al. Among authors: jonassen i. BMC Bioinformatics. 2018 Nov 7;19(1):408. doi: 10.1186/s12859-018-2442-5. BMC Bioinformatics. 2018. PMID: 30404611 Free PMC article.

7

Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data.

Xue Y, Lanzén A, Jonassen I. Xue Y, et al. Among authors: jonassen i. Bioinformatics. 2020 Jun 1;36(11):3365-3371. doi: 10.1093/bioinformatics/btaa177. Bioinformatics. 2020. PMID: 32167532 Free PMC article.

8

Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site.

Khan EA, Zhang X, Hanna EM, Bartosova Z, Yadetie F, Jonassen I, Goksøyr A, Arukwe A. Khan EA, et al. Among authors: jonassen i. Environ Res. 2020 Oct;189:109906. doi: 10.1016/j.envres.2020.109906. Epub 2020 Jul 12. Environ Res. 2020. PMID: 32980003 Free article.

9

Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology.

Khan EA, Zhang X, Hanna EM, Yadetie F, Jonassen I, Goksøyr A, Arukwe A. Khan EA, et al. Among authors: jonassen i. Sci Total Environ. 2021 Feb 10;755(Pt 1):142904. doi: 10.1016/j.scitotenv.2020.142904. Epub 2020 Oct 14. Sci Total Environ. 2021. PMID: 33138996 Free article.

10

ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species.

Hanna EM, Zhang X, Eide M, Fallahi S, Furmanek T, Yadetie F, Zielinski DC, Goksøyr A, Jonassen I. Hanna EM, et al. Among authors: jonassen i. Front Mol Biosci. 2020 Nov 26;7:591406. doi: 10.3389/fmolb.2020.591406. eCollection 2020. Front Mol Biosci. 2020. PMID: 33324679 Free PMC article.

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