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TSignal: a transformer model for signal peptide prediction.
Dumitrescu A, Jokinen E, Paatero A, Kellosalo J, Paavilainen VO, Lähdesmäki H. Dumitrescu A, et al. Among authors: jokinen e. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i347-i356. doi: 10.1093/bioinformatics/btad228. Bioinformatics. 2023. PMID: 37387131 Free PMC article.
Substrate specificity of 2-deoxy-D-ribose 5-phosphate aldolase (DERA) assessed by different protein engineering and machine learning methods.
Voutilainen S, Heinonen M, Andberg M, Jokinen E, Maaheimo H, Pääkkönen J, Hakulinen N, Rouvinen J, Lähdesmäki H, Kaski S, Rousu J, Penttilä M, Koivula A. Voutilainen S, et al. Among authors: jokinen e. Appl Microbiol Biotechnol. 2020 Dec;104(24):10515-10529. doi: 10.1007/s00253-020-10960-x. Epub 2020 Nov 4. Appl Microbiol Biotechnol. 2020. PMID: 33147349 Free PMC article.
Evolution and modulation of antigen-specific T cell responses in melanoma patients.
Huuhtanen J, Chen L, Jokinen E, Kasanen H, Lönnberg T, Kreutzman A, Peltola K, Hernberg M, Wang C, Yee C, Lähdesmäki H, Davis MM, Mustjoki S. Huuhtanen J, et al. Among authors: jokinen e. Nat Commun. 2022 Oct 11;13(1):5988. doi: 10.1038/s41467-022-33720-z. Nat Commun. 2022. PMID: 36220826 Free PMC article.
Single-cell characterization of anti-LAG-3 and anti-PD-1 combination treatment in patients with melanoma.
Huuhtanen J, Kasanen H, Peltola K, Lönnberg T, Glumoff V, Brück O, Dufva O, Peltonen K, Vikkula J, Jokinen E, Ilander M, Lee MH, Mäkelä S, Nyakas M, Li B, Hernberg M, Bono P, Lähdesmäki H, Kreutzman A, Mustjoki S. Huuhtanen J, et al. Among authors: jokinen e. J Clin Invest. 2023 Mar 15;133(6):e164809. doi: 10.1172/JCI164809. J Clin Invest. 2023. PMID: 36719749 Free PMC article.
Association of Ideal Cardiovascular Health in Youth with Cancer Risk in Adulthood: Cardiovascular Risk in Young Finns Study.
Niemelä J, Nuotio J, Laitinen TT, Kähönen M, Hutri N, Lehtimäki T, Jokinen E, Tossavainen P, Laitinen TP, Heinonen OJ, Dwyer T, Pahkala K, Rovio SP, Viikari J, Raitakari O, Juonala M. Niemelä J, et al. Among authors: jokinen e. Cancer Epidemiol Biomarkers Prev. 2024 Apr 19. doi: 10.1158/1055-9965.EPI-23-1000. Online ahead of print. Cancer Epidemiol Biomarkers Prev. 2024. PMID: 38639926
Omentum-derived matrix enables the study of metastatic ovarian cancer and stromal cell functions in a physiologically relevant environment.
Neilson LJ, Cartwright D, Risteli M, Jokinen EM, McGarry L, Sandvik T, Nikolatou K, Hodge K, Atkinson S, Vias M, Kay EJ, Brenton JD, Carlin LM, Bryant DM, Salo T, Zanivan S. Neilson LJ, et al. Among authors: jokinen em. Matrix Biol Plus. 2023 Nov 22;19-20:100136. doi: 10.1016/j.mbplus.2023.100136. eCollection 2023 Dec. Matrix Biol Plus. 2023. PMID: 38223308 Free PMC article.
331 results