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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.
Rockett RJ, Draper J, Gall M, Sim EM, Arnott A, Agius JE, Johnson-Mackinnon J, Fong W, Martinez E, Drew AP, Lee C, Ngo C, Ramsperger M, Ginn AN, Wang Q, Fennell M, Ko D, Hueston L, Kairaitis L, Holmes EC, O'Sullivan MN, Chen SC, Kok J, Dwyer DE, Sintchenko V. Rockett RJ, et al. Among authors: johnson mackinnon j. Nat Commun. 2022 May 18;13(1):2745. doi: 10.1038/s41467-022-30518-x. Nat Commun. 2022. PMID: 35585202 Free PMC article.
Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use.
Rockett R, Basile K, Maddocks S, Fong W, Agius JE, Johnson-Mackinnon J, Arnott A, Chandra S, Gall M, Draper J, Martinez E, Sim EM, Lee C, Ngo C, Ramsperger M, Ginn AN, Wang Q, Fennell M, Ko D, Lim HL, Gilroy N, O'Sullivan MVN, Chen SC, Kok J, Dwyer DE, Sintchenko V. Rockett R, et al. Among authors: johnson mackinnon j. N Engl J Med. 2022 Apr 14;386(15):1477-1479. doi: 10.1056/NEJMc2120219. Epub 2022 Mar 9. N Engl J Med. 2022. PMID: 35263515 Free PMC article. No abstract available.
SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture.
Agius JE, Johnson-Mackinnon JC, Fong W, Gall M, Lam C, Basile K, Kok J, Arnott A, Sintchenko V, Rockett RJ. Agius JE, et al. Among authors: johnson mackinnon jc. Front Microbiol. 2022 May 19;13:824217. doi: 10.3389/fmicb.2022.824217. eCollection 2022. Front Microbiol. 2022. PMID: 35663867 Free PMC article.
Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine.
Basile K, Rockett RJ, McPhie K, Fennell M, Johnson-Mackinnon J, Agius JE, Fong W, Rahman H, Ko D, Donavan L, Hueston L, Lam C, Arnott A, Chen SC, Maddocks S, O'Sullivan MV, Dwyer DE, Sintchenko V, Kok J. Basile K, et al. Among authors: johnson mackinnon j. Viruses. 2022 Sep 13;14(9):2023. doi: 10.3390/v14092023. Viruses. 2022. PMID: 36146829 Free PMC article.
A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs.
Lam C, Johnson-Mackinnon J, Basile K, Fong W, Suster CJ, Gall M, Agius J, Chandra S, Draper J, Martinez E, Drew A, Wang Q, Chen SC, Kok J, Dwyer DE, Sintchenko V, Rockett RJ. Lam C, et al. Among authors: johnson mackinnon j. Microbiol Spectr. 2023 Dec 12;11(6):e0220223. doi: 10.1128/spectrum.02202-23. Epub 2023 Nov 15. Microbiol Spectr. 2023. PMID: 37966271 Free PMC article.
Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis.
Tanifuji G, Cenci U, Moog D, Dean S, Nakayama T, David V, Fiala I, Curtis BA, Sibbald SJ, Onodera NT, Colp M, Flegontov P, Johnson-MacKinnon J, McPhee M, Inagaki Y, Hashimoto T, Kelly S, Gull K, Lukeš J, Archibald JM. Tanifuji G, et al. Among authors: johnson mackinnon j. Sci Rep. 2017 Sep 15;7(1):11688. doi: 10.1038/s41598-017-11866-x. Sci Rep. 2017. PMID: 28916813 Free PMC article.