Johnson MS - Search Results

1

Structural leitmotif and functional variations of the structural catalytic core in (chymo)trypsin-like serine/cysteine fold proteinases.

Denesyuk AI, Permyakov SE, Johnson MS, Permyakov EA, Uversky VN, Denessiouk K. Denesyuk AI, et al. Among authors: johnson ms. Int J Biol Macromol. 2021 May 15;179:601-609. doi: 10.1016/j.ijbiomac.2021.03.042. Epub 2021 Mar 10. Int J Biol Macromol. 2021. PMID: 33713772

Proteinases with the (chymo)trypsin-like serine/cysteine fold comprise a large superfamily performing their function through the Acid - Base - Nucleophile catalytic triad. In our previous work (Denesyuk AI, Johnson MS, Salo-Ahen OMH, Uversky VN, Denessiouk K. Int J …

Proteinases with the (chymo)trypsin-like serine/cysteine fold comprise a large superfamily performing their function through the Acid - Base …

2

Structure of cytokine hydrophobic cores.

Denesyuk AI, Johnson MS, Zav'yalov VP, Korpela T. Denesyuk AI, et al. Among authors: johnson ms. J Theor Biol. 1996 Jun 21;180(4):297-307. doi: 10.1006/jtbi.1996.0104. J Theor Biol. 1996. PMID: 8776464

3

Denessiouk KA, Lehtonen JV, Korpela T, Johnson MS. Denessiouk KA, et al. Among authors: johnson ms. Protein Sci. 1998 May;7(5):1136-46. doi: 10.1002/pro.5560070507. Protein Sci. 1998. PMID: 9605318 Free PMC article.

4

Finding local structural similarities among families of unrelated protein structures: a generic non-linear alignment algorithm.

Lehtonen JV, Denessiouk K, May AC, Johnson MS. Lehtonen JV, et al. Among authors: johnson ms. Proteins. 1999 Feb 15;34(3):341-55. doi: 10.1002/(sici)1097-0134(19990215)34:3<341::aid-prot7>3.0.co;2-z. Proteins. 1999. PMID: 10024021

5

Enzyme-mononucleotide interactions: three different folds share common structural elements for ATP recognition.

Denessiouk KA, Lehtonen JV, Johnson MS. Denessiouk KA, et al. Among authors: johnson ms. Protein Sci. 1998 Aug;7(8):1768-71. doi: 10.1002/pro.5560070811. Protein Sci. 1998. PMID: 10082373 Free PMC article.

6

Common structural elements in the architecture of the cofactor-binding domains in unrelated families of pyridoxal phosphate-dependent enzymes.

Denessiouk KA, Denesyuk AI, Lehtonen JV, Korpela T, Johnson MS. Denessiouk KA, et al. Among authors: johnson ms. Proteins. 1999 May 1;35(2):250-61. doi: 10.1002/(sici)1097-0134(19990501)35:2<250::aid-prot10>3.0.co;2-x. Proteins. 1999. PMID: 10223296

7

When fold is not important: a common structural framework for adenine and AMP binding in 12 unrelated protein families.

Denessiouk KA, Johnson MS. Denessiouk KA, et al. Among authors: johnson ms. Proteins. 2000 Feb 15;38(3):310-26. Proteins. 2000. PMID: 10713991

8

Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins.

Denessiouk KA, Rantanen VV, Johnson MS. Denessiouk KA, et al. Among authors: johnson ms. Proteins. 2001 Aug 15;44(3):282-91. doi: 10.1002/prot.1093. Proteins. 2001. PMID: 11455601

9

A fragment library based on Gaussian mixtures predicting favorable molecular interactions.

Rantanen VV, Denessiouk KA, Gyllenberg M, Koski T, Johnson MS. Rantanen VV, et al. Among authors: johnson ms. J Mol Biol. 2001 Oct 12;313(1):197-214. doi: 10.1006/jmbi.2001.5023. J Mol Biol. 2001. PMID: 11601856

10

Functional attributes of the phosphate group binding cup of pyridoxal phosphate-dependent enzymes.

Denesyuk AI, Denessiouk KA, Korpela T, Johnson MS. Denesyuk AI, et al. Among authors: johnson ms. J Mol Biol. 2002 Feb 8;316(1):155-72. doi: 10.1006/jmbi.2001.5310. J Mol Biol. 2002. PMID: 11829510

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