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Wrangling Galaxy's reference data.
Blankenberg D, Johnson JE; Galaxy Team; Taylor J, Nekrutenko A. Blankenberg D, et al. Among authors: johnson je. Bioinformatics. 2014 Jul 1;30(13):1917-9. doi: 10.1093/bioinformatics/btu119. Epub 2014 Feb 28. Bioinformatics. 2014. PMID: 24585771 Free PMC article.
PANAL: an integrated resource for Protein sequence ANALysis.
Silverstein KA, Kilian A, Freeman JL, Johnson JE, Awad IA, Retzel EF. Silverstein KA, et al. Among authors: johnson je. Bioinformatics. 2000 Dec;16(12):1157-8. doi: 10.1093/bioinformatics/16.12.1157. Bioinformatics. 2000. PMID: 11159337
TableView: portable genomic data visualization.
Johnson JE, Stromvik MV, Silverstein KA, Crow JA, Shoop E, Retzel EF. Johnson JE, et al. Bioinformatics. 2003 Jul 1;19(10):1292-3. doi: 10.1093/bioinformatics/btg136. Bioinformatics. 2003. PMID: 12835275
MMuFLR: missense mutation and frameshift location reporter.
Rathe SK, Johnson JE, Silverstein KA, Erdmann JJ, Watson AL, Popescu FE, Ohlfest JR, Largaespada DA. Rathe SK, et al. Among authors: johnson je. Bioinformatics. 2013 Sep 15;29(18):2353-4. doi: 10.1093/bioinformatics/btt385. Epub 2013 Jul 3. Bioinformatics. 2013. PMID: 23825368 Free PMC article.
Metaproteomic analysis using the Galaxy framework.
Jagtap PD, Blakely A, Murray K, Stewart S, Kooren J, Johnson JE, Rhodus NL, Rudney J, Griffin TJ. Jagtap PD, et al. Among authors: johnson je. Proteomics. 2015 Oct;15(20):3553-65. doi: 10.1002/pmic.201500074. Epub 2015 Jul 24. Proteomics. 2015. PMID: 26058579
Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.
Sajulga R, Mehta S, Kumar P, Johnson JE, Guerrero CR, Ryan MC, Karchin R, Jagtap PD, Griffin TJ. Sajulga R, et al. Among authors: johnson je. J Proteome Res. 2018 Dec 7;17(12):4329-4336. doi: 10.1021/acs.jproteome.8b00404. Epub 2018 Sep 5. J Proteome Res. 2018. PMID: 30130115
1,510 results