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Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM. Looney B, et al. Among authors: johnson j. New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892. Epub 2022 Jan 16. New Phytol. 2022. PMID: 34861049 Free article.
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.
Mosier AC, Miller CS, Frischkorn KR, Ohm RA, Li Z, LaButti K, Lapidus A, Lipzen A, Chen C, Johnson J, Lindquist EA, Pan C, Hettich RL, Grigoriev IV, Singer SW, Banfield JF. Mosier AC, et al. Among authors: johnson j. Front Microbiol. 2016 Mar 3;7:238. doi: 10.3389/fmicb.2016.00238. eCollection 2016. Front Microbiol. 2016. PMID: 26973616 Free PMC article.
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa.
Thieme N, Wu VW, Dietschmann A, Salamov AA, Wang M, Johnson J, Singan VR, Grigoriev IV, Glass NL, Somerville CR, Benz JP. Thieme N, et al. Among authors: johnson j. Biotechnol Biofuels. 2017 Jun 12;10:149. doi: 10.1186/s13068-017-0807-z. eCollection 2017. Biotechnol Biofuels. 2017. PMID: 28616073 Free PMC article.
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.
Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, Lipzen A, Ohm RA, Nagy I, Pangilinan J, Yan J, Xiong Y, Grigoriev IV, Hibbett DS, Nagy LG. Krizsán K, et al. Among authors: johnson j. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7409-7418. doi: 10.1073/pnas.1817822116. Epub 2019 Mar 22. Proc Natl Acad Sci U S A. 2019. PMID: 30902897 Free PMC article.
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613.
Park H, Min B, Jang Y, Kim J, Lipzen A, Sharma A, Andreopoulos B, Johnson J, Riley R, Spatafora JW, Henrissat B, Kim KH, Grigoriev IV, Kim JJ, Choi IG. Park H, et al. Among authors: johnson j. Appl Microbiol Biotechnol. 2019 Oct;103(19):8145-8155. doi: 10.1007/s00253-019-10089-6. Epub 2019 Sep 3. Appl Microbiol Biotechnol. 2019. PMID: 31482283 Free article.
Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium.
Jiménez DJ, Wang Y, Chaib de Mares M, Cortes-Tolalpa L, Mertens JA, Hector RE, Lin J, Johnson J, Lipzen A, Barry K, Mondo SJ, Grigoriev IV, Nichols NN, van Elsas JD. Jiménez DJ, et al. Among authors: johnson j. FEMS Microbiol Ecol. 2020 Jan 1;96(1):fiz186. doi: 10.1093/femsec/fiz186. FEMS Microbiol Ecol. 2020. PMID: 31769802
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.
Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, Kiba T, Sakurai T, Tavares R, Nusinow DA, Baxter I, Schmutz J, Brutnell TP, Kellogg EA. Mamidi S, et al. Among authors: johnson j. Nat Biotechnol. 2020 Oct;38(10):1203-1210. doi: 10.1038/s41587-020-0681-2. Epub 2020 Oct 5. Nat Biotechnol. 2020. PMID: 33020633 Free PMC article.
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM. Wu G, et al. Among authors: johnson j. New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858. Epub 2021 Dec 9. New Phytol. 2022. PMID: 34767630 Free article.
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