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Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.
Omelchenko AA, Siwek JC, Chhibbar P, Arshad S, Nazarali I, Nazarali K, Rosengart A, Rahimikollu J, Tilstra J, Shlomchik MJ, Koes DR, Joglekar AV, Das J. Omelchenko AA, et al. Among authors: joglekar av. bioRxiv [Preprint]. 2024 May 4:2024.05.01.592062. doi: 10.1101/2024.05.01.592062. bioRxiv. 2024. PMID: 38746274 Free PMC article. Preprint.
Temporal dynamics and genomic programming of plasma cell fates.
Manakkat Vijay GK, Zhou M, Thakkar K, Rothrauff A, Chawla AS, Chen D, Lau LC, Gerges PH, Chetal K, Chhibbar P, Fan J, Das J, Joglekar A, Borghesi L, Salomonis N, Xu H, Singh H. Manakkat Vijay GK, et al. Among authors: joglekar a. Nat Immunol. 2024 May 2. doi: 10.1038/s41590-024-01831-y. Online ahead of print. Nat Immunol. 2024. PMID: 38698087
De novo identification of CD4+ T cell epitopes.
Zdinak PM, Trivedi N, Grebinoski S, Torrey J, Martinez EZ, Martinez S, Hicks L, Ranjan R, Makani VKK, Roland MM, Kublo L, Arshad S, Anderson MS, Vignali DAA, Joglekar AV. Zdinak PM, et al. Among authors: joglekar av. Nat Methods. 2024 May;21(5):846-856. doi: 10.1038/s41592-024-02255-0. Epub 2024 Apr 24. Nat Methods. 2024. PMID: 38658646 Free PMC article.
ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer's Disease.
Hu W, Foord C, Hsu J, Fan L, Corley MJ, Bhatia TN, Xu S, Belchikov N, He Y, Pang AP, Lanjewar SN, Jarroux J, Joglekar A, Milner TA, Ndhlovu LC, Zhang J, Butelman E, Sloan SA, Lee VM, Gan L, Tilgner HU. Hu W, et al. Among authors: joglekar a. bioRxiv [Preprint]. 2024 Feb 28:2024.02.24.581897. doi: 10.1101/2024.02.24.581897. bioRxiv. 2024. PMID: 38464236 Free PMC article. Preprint.
The beta cell-immune cell interface in type 1 diabetes (T1D).
James EA, Joglekar AV, Linnemann AK, Russ HA, Kent SC. James EA, et al. Among authors: joglekar av. Mol Metab. 2023 Dec;78:101809. doi: 10.1016/j.molmet.2023.101809. Epub 2023 Sep 20. Mol Metab. 2023. PMID: 37734713 Free PMC article. Review.
115 results