Jin YF - Search Results

1

Transcriptional profiles of non-neuronal and immune cells in mouse trigeminal ganglia.

Mecklenburg J, Shein SA, Malmir M, Hovhannisyan AH, Weldon K, Zou Y, Lai Z, Jin YF, Ruparel S, Tumanov AV, Akopian AN. Mecklenburg J, et al. Among authors: jin yf. Front Pain Res (Lausanne). 2023 Oct 31;4:1274811. doi: 10.3389/fpain.2023.1274811. eCollection 2023. Front Pain Res (Lausanne). 2023. PMID: 38028432 Free PMC article.

2

Classification of Cancer Types Using Graph Convolutional Neural Networks.

Ramirez R, Chiu YC, Hererra A, Mostavi M, Ramirez J, Chen Y, Huang Y, Jin YF. Ramirez R, et al. Among authors: jin yf. Front Phys. 2020 Jun;8:203. doi: 10.3389/fphy.2020.00203. Epub 2020 Jun 17. Front Phys. 2020. PMID: 33437754 Free PMC article.

3

Characterizing Macrophages Diversity in COVID-19 Patients Using Deep Learning.

Flores MA, Paniagua K, Huang W, Ramirez R, Falcon L, Liu A, Chen Y, Huang Y, Jin Y. Flores MA, et al. Genes (Basel). 2022 Dec 1;13(12):2264. doi: 10.3390/genes13122264. Genes (Basel). 2022. PMID: 36553530 Free PMC article.

4

Transformer for Gene Expression Modeling (T-GEM): An Interpretable Deep Learning Model for Gene Expression-Based Phenotype Predictions.

Zhang TH, Hasib MM, Chiu YC, Han ZF, Jin YF, Flores M, Chen Y, Huang Y. Zhang TH, et al. Among authors: jin yf. Cancers (Basel). 2022 Sep 29;14(19):4763. doi: 10.3390/cancers14194763. Cancers (Basel). 2022. PMID: 36230685 Free PMC article.

5

Deriving a Boolean dynamics to reveal macrophage activation with in vitro temporal cytokine expression profiles.

Ramirez R, Herrera AM, Ramirez J, Qian C, Melton DW, Shireman PK, Jin YF. Ramirez R, et al. Among authors: jin yf. BMC Bioinformatics. 2019 Dec 18;20(1):725. doi: 10.1186/s12859-019-3304-5. BMC Bioinformatics. 2019. PMID: 31852428 Free PMC article.

6

Deep learning tackles single-cell analysis-a survey of deep learning for scRNA-seq analysis.

Flores M, Liu Z, Zhang T, Hasib MM, Chiu YC, Ye Z, Paniagua K, Jo S, Zhang J, Gao SJ, Jin YF, Chen Y, Huang Y. Flores M, et al. Among authors: jin yf. Brief Bioinform. 2022 Jan 17;23(1):bbab531. doi: 10.1093/bib/bbab531. Brief Bioinform. 2022. PMID: 34929734 Free PMC article.

7

Prediction and interpretation of cancer survival using graph convolution neural networks.

Ramirez R, Chiu YC, Zhang S, Ramirez J, Chen Y, Huang Y, Jin YF. Ramirez R, et al. Among authors: jin yf. Methods. 2021 Aug;192:120-130. doi: 10.1016/j.ymeth.2021.01.004. Epub 2021 Jan 21. Methods. 2021. PMID: 33484826 Free PMC article.

8

Detection of high variability in gene expression from single-cell RNA-seq profiling.

Chen HI, Jin Y, Huang Y, Chen Y. Chen HI, et al. BMC Genomics. 2016 Aug 22;17 Suppl 7(Suppl 7):508. doi: 10.1186/s12864-016-2897-6. BMC Genomics. 2016. PMID: 27556924 Free PMC article.

9

Reduced BDNF attenuates inflammation and angiogenesis to improve survival and cardiac function following myocardial infarction in mice.

Halade GV, Ma Y, Ramirez TA, Zhang J, Dai Q, Hensler JG, Lopez EF, Ghasemi O, Jin YF, Lindsey ML. Halade GV, et al. Among authors: jin yf. Am J Physiol Heart Circ Physiol. 2013 Dec;305(12):H1830-42. doi: 10.1152/ajpheart.00224.2013. Epub 2013 Oct 18. Am J Physiol Heart Circ Physiol. 2013. PMID: 24142413 Free PMC article.

10

Transgenic overexpression of matrix metalloproteinase-9 in macrophages attenuates the inflammatory response and improves left ventricular function post-myocardial infarction.

Zamilpa R, Ibarra J, de Castro Brás LE, Ramirez TA, Nguyen N, Halade GV, Zhang J, Dai Q, Dayah T, Chiao YA, Lowell W, Ahuja SS, D'Armiento J, Jin YF, Lindsey ML. Zamilpa R, et al. Among authors: jin yf. J Mol Cell Cardiol. 2012 Nov;53(5):599-608. doi: 10.1016/j.yjmcc.2012.07.017. Epub 2012 Aug 3. J Mol Cell Cardiol. 2012. PMID: 22884843 Free PMC article.

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