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Comparative genomics of protoploid Saccharomycetaceae.
Génolevures Consortium; Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E. Génolevures Consortium, et al. Among authors: jean g. Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109. Epub 2009 Jun 12. Genome Res. 2009. PMID: 19525356 Free PMC article.
SyDiG: uncovering Synteny in Distant Genomes.
Jean G, Nikolski M. Jean G, et al. Int J Bioinform Res Appl. 2011;7(1):43-62. doi: 10.1504/IJBRA.2011.039169. Int J Bioinform Res Appl. 2011. PMID: 21441096 Free article.
RNA-Seq read alignments with PALMapper.
Jean G, Kahles A, Sreedharan VT, De Bona F, Rätsch G. Jean G, et al. Curr Protoc Bioinformatics. 2010 Dec;Chapter 11:Unit 11.6. doi: 10.1002/0471250953.bi1106s32. Curr Protoc Bioinformatics. 2010. PMID: 21154708
Super short operations on both gene order and intergenic sizes.
Oliveira AR, Jean G, Fertin G, Dias U, Dias Z. Oliveira AR, et al. Among authors: jean g. Algorithms Mol Biol. 2019 Nov 5;14:21. doi: 10.1186/s13015-019-0156-5. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 31709002 Free PMC article.
Sorting Signed Permutations by Intergenic Reversals.
Oliveira AR, Jean G, Fertin G, Brito KL, Bulteau L, Dias U, Dias Z. Oliveira AR, et al. Among authors: jean g. IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2870-2876. doi: 10.1109/TCBB.2020.2993002. Epub 2021 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 32396097
Sorting Permutations by Intergenic Operations.
Oliveira AR, Jean G, Fertin G, Brito KL, Dias U, Dias Z. Oliveira AR, et al. Among authors: jean g. IEEE/ACM Trans Comput Biol Bioinform. 2021 Nov-Dec;18(6):2080-2093. doi: 10.1109/TCBB.2021.3077418. Epub 2021 Dec 8. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 33945484
328 results