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2015 1
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Page 1
SnakeLines: integrated set of computational pipelines for sequencing reads.
Budiš J, Krampl W, Kucharík M, Hekel R, Goga A, Sitarčík J, Lichvár M, Smol'ak D, Böhmer M, Baláž A, Ďuriš F, Gazdarica J, Šoltys K, Turňa J, Radvánszky J, Szemes T. Budiš J, et al. J Integr Bioinform. 2023 Aug 21;20(3):20220059. doi: 10.1515/jib-2022-0059. eCollection 2023 Sep 1. J Integr Bioinform. 2023. PMID: 37602733 Free PMC article.
Combination of expert guidelines-based and machine learning-based approaches leads to superior accuracy of automated prediction of clinical effect of copy number variations.
Sládeček T, Gažiová M, Kucharík M, Zaťková A, Pös Z, Pös O, Krampl W, Tomková E, Hýblová M, Minárik G, Radvánszky J, Budiš J, Szemes T. Sládeček T, et al. Among authors: budis j. Sci Rep. 2023 Jun 29;13(1):10531. doi: 10.1038/s41598-023-37352-1. Sci Rep. 2023. PMID: 37386017 Free PMC article.
PHERI-Phage Host ExploRation Pipeline.
Baláž A, Kajsik M, Budiš J, Szemes T, Turňa J. Baláž A, et al. Among authors: budis j. Microorganisms. 2023 May 26;11(6):1398. doi: 10.3390/microorganisms11061398. Microorganisms. 2023. PMID: 37374901 Free PMC article.
WarpSTR: determining tandem repeat lengths using raw nanopore signals.
Sitarčík J, Vinař T, Brejová B, Krampl W, Budiš J, Radvánszky J, Lucká M. Sitarčík J, et al. Among authors: budis j. Bioinformatics. 2023 Jun 1;39(6):btad388. doi: 10.1093/bioinformatics/btad388. Bioinformatics. 2023. PMID: 37326967 Free PMC article.
49 results