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Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.
PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323. Epub 2013 Feb 28.
PLoS Genet. 2013.
PMID: 23468653
Free PMC article.
Swainsonine Biosynthesis Genes in Diverse Symbiotic and Pathogenic Fungi.
Cook D, Donzelli BGG, Creamer R, Baucom DL, Gardner DR, Pan J, Moore N, Krasnoff SB, Jaromczyk JW, Schardl CL.
Cook D, et al. Among authors: jaromczyk jw.
G3 (Bethesda). 2017 Jun 7;7(6):1791-1797. doi: 10.1534/g3.117.041384.
G3 (Bethesda). 2017.
PMID: 28381497
Free PMC article.
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Statistical phylogenetic tree analysis using differences of means.
Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R.
Arnaoudova E, et al. Among authors: jaromczyk jw.
Front Neurosci. 2010 Aug 3;4:47. doi: 10.3389/fnins.2010.00047. eCollection 2010.
Front Neurosci. 2010.
PMID: 20802801
Free PMC article.
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A linear-time algorithm for finding a maximum-length ORF in a splice graph.
Jaromczyk JW, Moore N, Schardl CL.
Jaromczyk JW, et al.
Int J Comput Biol Drug Des. 2012;5(3-4):284-97. doi: 10.1504/IJCBDD.2012.049212. Epub 2012 Sep 24.
Int J Comput Biol Drug Des. 2012.
PMID: 23013654
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Rapid and Reusable Text Visualization and Exploration Development with DELVE.
Harris DR, Kavuluru R, Jaromczyk JW, Johnson TR.
Harris DR, et al. Among authors: jaromczyk jw.
AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:139-148. eCollection 2017.
AMIA Jt Summits Transl Sci Proc. 2017.
PMID: 28815123
Free PMC article.
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Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 : Cadiz, KY, USA. 8-10 April 2016.
Rouchka EC, Chariker JH, Harrison BJ, Park JW, Cao X, Pounds S, Raimondi S, Downing J, Ribeiro R, Rubnitz J, Lamba J, Daigle BJ Jr, Burgess D, Gehrlich S, Carmen JC, Johnson N, Emani C, Gehrlich S, Burgess D, Carmen JC, De Silva K, Heaton MP, Kalbfleisch TS, Viangteeravat T, Mudunuri R, Ajayi O, Şen F, Huang EY, Mohebbi M, Florian L, Jackson DJ, Naber JF, Sabbir AKM, Ellingson SR, Lu Y, Phillips CA, Langston MA, Sevakula RK, Thirukovalluru R, Verma NK, Cui Y, Sayed M, Park JW, Wang J, Liu Q, Shyr Y, Zhang X, Ellingson SR, Prodduturi N, Oliver GR, Grill D, Na J, Eckel-Passow J, Klee EW, Goodin MM, Farman M, Inocencio H, Jang C, Jaromczyk JW, Moore N, Sovacool K, Dent L, Izban M, Mandape S, Sakhare S, Pratap S, Marshall D, DePriest MS, MacLeod JN, Kalbfleisch TS, Emani C, Adam H, Blandford E, Campbell J, Castlen J, Dixon B, Gilbert G, Hall A, Kreisle P, Lasher J, Oakes B, Speer A, Valentine M, Nagisetty NSVR, Jose R, Viangteeravat T, Rooney R, Hains D.
Rouchka EC, et al. Among authors: jaromczyk jw.
BMC Bioinformatics. 2016 Aug 19;17(Suppl 10):297. doi: 10.1186/s12859-016-1154-y.
BMC Bioinformatics. 2016.
PMID: 28166713
Free PMC article.
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Analysis of chameleon sequences and their implications in biological processes.
Guo JT, Jaromczyk JW, Xu Y.
Guo JT, et al. Among authors: jaromczyk jw.
Proteins. 2007 May 15;67(3):548-58. doi: 10.1002/prot.21285.
Proteins. 2007.
PMID: 17299764
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