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Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci.
Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, Roe BA, O'Sullivan DM, Scott B, Tudzynski P, An Z, Arnaoudova EG, Bullock CT, Charlton ND, Chen L, Cox M, Dinkins RD, Florea S, Glenn AE, Gordon A, Güldener U, Harris DR, Hollin W, Jaromczyk J, Johnson RD, Khan AK, Leistner E, Leuchtmann A, Li C, Liu J, Liu J, Liu M, Mace W, Machado C, Nagabhyru P, Pan J, Schmid J, Sugawara K, Steiner U, Takach JE, Tanaka E, Webb JS, Wilson EV, Wiseman JL, Yoshida R, Zeng Z. Schardl CL, et al. Among authors: jaromczyk jw. PLoS Genet. 2013;9(2):e1003323. doi: 10.1371/journal.pgen.1003323. Epub 2013 Feb 28. PLoS Genet. 2013. PMID: 23468653 Free PMC article.
Swainsonine Biosynthesis Genes in Diverse Symbiotic and Pathogenic Fungi.
Cook D, Donzelli BGG, Creamer R, Baucom DL, Gardner DR, Pan J, Moore N, Krasnoff SB, Jaromczyk JW, Schardl CL. Cook D, et al. Among authors: jaromczyk jw. G3 (Bethesda). 2017 Jun 7;7(6):1791-1797. doi: 10.1534/g3.117.041384. G3 (Bethesda). 2017. PMID: 28381497 Free PMC article.
Statistical phylogenetic tree analysis using differences of means.
Arnaoudova E, Haws DC, Huggins P, Jaromczyk JW, Moore N, Schardl CL, Yoshida R. Arnaoudova E, et al. Among authors: jaromczyk jw. Front Neurosci. 2010 Aug 3;4:47. doi: 10.3389/fnins.2010.00047. eCollection 2010. Front Neurosci. 2010. PMID: 20802801 Free PMC article.
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 : Cadiz, KY, USA. 8-10 April 2016.
Rouchka EC, Chariker JH, Harrison BJ, Park JW, Cao X, Pounds S, Raimondi S, Downing J, Ribeiro R, Rubnitz J, Lamba J, Daigle BJ Jr, Burgess D, Gehrlich S, Carmen JC, Johnson N, Emani C, Gehrlich S, Burgess D, Carmen JC, De Silva K, Heaton MP, Kalbfleisch TS, Viangteeravat T, Mudunuri R, Ajayi O, Şen F, Huang EY, Mohebbi M, Florian L, Jackson DJ, Naber JF, Sabbir AKM, Ellingson SR, Lu Y, Phillips CA, Langston MA, Sevakula RK, Thirukovalluru R, Verma NK, Cui Y, Sayed M, Park JW, Wang J, Liu Q, Shyr Y, Zhang X, Ellingson SR, Prodduturi N, Oliver GR, Grill D, Na J, Eckel-Passow J, Klee EW, Goodin MM, Farman M, Inocencio H, Jang C, Jaromczyk JW, Moore N, Sovacool K, Dent L, Izban M, Mandape S, Sakhare S, Pratap S, Marshall D, DePriest MS, MacLeod JN, Kalbfleisch TS, Emani C, Adam H, Blandford E, Campbell J, Castlen J, Dixon B, Gilbert G, Hall A, Kreisle P, Lasher J, Oakes B, Speer A, Valentine M, Nagisetty NSVR, Jose R, Viangteeravat T, Rooney R, Hains D. Rouchka EC, et al. Among authors: jaromczyk jw. BMC Bioinformatics. 2016 Aug 19;17(Suppl 10):297. doi: 10.1186/s12859-016-1154-y. BMC Bioinformatics. 2016. PMID: 28166713 Free PMC article.