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InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning.
Genes (Basel). 2021 Jan 28;12(2):190. doi: 10.3390/genes12020190.
Genes (Basel). 2021.
PMID: 33525408
Free PMC article.
K-mer-based machine learning method to classify LTR-retrotransposons in plant genomes.
Orozco-Arias S, Candamil-Cortés MS, Jaimes PA, Piña JS, Tabares-Soto R, Guyot R, Isaza G.
Orozco-Arias S, et al. Among authors: jaimes pa.
PeerJ. 2021 May 19;9:e11456. doi: 10.7717/peerj.11456. eCollection 2021.
PeerJ. 2021.
PMID: 34055489
Free PMC article.
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Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning.
Orozco-Arias S, Candamil-Cortes MS, Jaimes PA, Valencia-Castrillon E, Tabares-Soto R, Isaza G, Guyot R.
Orozco-Arias S, et al. Among authors: jaimes pa.
J Integr Bioinform. 2022 Jul 12;19(3):20210036. doi: 10.1515/jib-2021-0036. eCollection 2022 Sep 1.
J Integr Bioinform. 2022.
PMID: 35822734
Free PMC article.
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Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes.
Orozco-Arias S, Humberto Lopez-Murillo L, Candamil-Cortés MS, Arias M, Jaimes PA, Rossi Paschoal A, Tabares-Soto R, Isaza G, Guyot R.
Orozco-Arias S, et al. Among authors: jaimes pa.
Brief Bioinform. 2023 Jan 19;24(1):bbac511. doi: 10.1093/bib/bbac511.
Brief Bioinform. 2023.
PMID: 36502372
Free PMC article.
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