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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.
Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, Wilmes P, Hettich RL, Armengaud J. Van Den Bossche T, et al. Among authors: jagtap pd. Microbiome. 2021 Dec 20;9(1):243. doi: 10.1186/s40168-021-01176-w. Microbiome. 2021. PMID: 34930457 Free PMC article.
Microbiomes - embracing complexity.
Jagtap P, Griffin T, Armengaud J. Jagtap P, et al. Proteomics. 2015 Oct;15(20):3405-6. doi: 10.1002/pmic.201570183. Proteomics. 2015. PMID: 26468045 No abstract available.
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ 4th, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA. Saito MA, et al. Among authors: jagtap pd. J Proteome Res. 2019 Apr 5;18(4):1461-1476. doi: 10.1021/acs.jproteome.8b00761. Epub 2019 Mar 12. J Proteome Res. 2019. PMID: 30702898 Free PMC article. Review.
metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes.
Easterly CW, Sajulga R, Mehta S, Johnson J, Kumar P, Hubler S, Mesuere B, Rudney J, Griffin TJ, Jagtap PD. Easterly CW, et al. Among authors: jagtap pd. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S82-S91. doi: 10.1074/mcp.RA118.001240. Epub 2019 Jun 24. Mol Cell Proteomics. 2019. PMID: 31235611 Free PMC article.
Survey of metaproteomics software tools for functional microbiome analysis.
Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. Among authors: jagtap pd. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.
[No title available]
[No authors listed] [No authors listed] PMID: 33451500
Updates on metaQuantome Software for Quantitative Metaproteomics.
Mehta S, Kumar P, Crane M, Johnson JE, Sajulga R, Nguyen DDA, McGowan T, Arntzen MØ, Griffin TJ, Jagtap PD. Mehta S, et al. Among authors: jagtap pd. J Proteome Res. 2021 Apr 2;20(4):2130-2137. doi: 10.1021/acs.jproteome.0c00960. Epub 2021 Mar 8. J Proteome Res. 2021. PMID: 33683127
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
64 results