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Multiomics in the central Arctic Ocean for benchmarking biodiversity change.
Mock T, Boulton W, Balmonte JP, Barry K, Bertilsson S, Bowman J, Buck M, Bratbak G, Chamberlain EJ, Cunliffe M, Creamean J, Ebenhöh O, Eggers SL, Fong AA, Gardner J, Gradinger R, Granskog MA, Havermans C, Hill T, Hoppe CJM, Korte K, Larsen A, Müller O, Nicolaus A, Oldenburg E, Popa O, Rogge S, Schäfer H, Shoemaker K, Snoeijs-Leijonmalm P, Torstensson A, Valentin K, Vader A, Barry K, Chen IA, Clum A, Copeland A, Daum C, Eloe-Fadrosh E, Foster B, Foster B, Grigoriev IV, Huntemann M, Ivanova N, Kuo A, Kyrpides NC, Mukherjee S, Palaniappan K, Reddy TBK, Salamov A, Roux S, Varghese N, Woyke T, Wu D, Leggett RM, Moulton V, Metfies K. Mock T, et al. Among authors: ivanova n. PLoS Biol. 2022 Oct 17;20(10):e3001835. doi: 10.1371/journal.pbio.3001835. eCollection 2022 Oct. PLoS Biol. 2022. PMID: 36251644 Free PMC article.
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Among authors: ivanova nn. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, Kyrpides NC, Blackall LL, McMahon KD, Hugenholtz P. García Martín H, et al. Among authors: ivanova n. Nat Biotechnol. 2006 Oct;24(10):1263-9. doi: 10.1038/nbt1247. Epub 2006 Sep 24. Nat Biotechnol. 2006. PMID: 16998472 Free article.
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC. Mavromatis K, et al. Among authors: ivanova n. Nat Methods. 2007 Jun;4(6):495-500. doi: 10.1038/nmeth1043. Epub 2007 Apr 29. Nat Methods. 2007. PMID: 17468765 Free article.
Annotation of metagenome short reads using proxygenes.
Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, Markowitz VM. Dalevi D, et al. Among authors: ivanova nn. Bioinformatics. 2008 Aug 15;24(16):i7-13. doi: 10.1093/bioinformatics/btn276. Bioinformatics. 2008. PMID: 18689842
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA. Wu D, et al. Among authors: ivanova nn. Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656. Nature. 2009. PMID: 20033048 Free PMC article.
1,237 results