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Machine learning helps identify CHRONO as a circadian clock component.
Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch JB. Anafi RC, et al. Among authors: hughes me. PLoS Biol. 2014 Apr 15;12(4):e1001840. doi: 10.1371/journal.pbio.1001840. eCollection 2014 Apr. PLoS Biol. 2014. PMID: 24737000 Free PMC article.
Harmonics of circadian gene transcription in mammals.
Hughes ME, DiTacchio L, Hayes KR, Vollmers C, Pulivarthy S, Baggs JE, Panda S, Hogenesch JB. Hughes ME, et al. PLoS Genet. 2009 Apr;5(4):e1000442. doi: 10.1371/journal.pgen.1000442. Epub 2009 Apr 3. PLoS Genet. 2009. PMID: 19343201 Free PMC article.
Considerations for RNA-seq analysis of circadian rhythms.
Li J, Grant GR, Hogenesch JB, Hughes ME. Li J, et al. Among authors: hughes me. Methods Enzymol. 2015;551:349-67. doi: 10.1016/bs.mie.2014.10.020. Epub 2014 Dec 26. Methods Enzymol. 2015. PMID: 25662464
The network as the target.
Baggs JE, Hughes ME, Hogenesch JB. Baggs JE, et al. Among authors: hughes me. Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):127-133. doi: 10.1002/wsbm.57. Wiley Interdiscip Rev Syst Biol Med. 2010. PMID: 20836017
Guidelines for Genome-Scale Analysis of Biological Rhythms.
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB. Hughes ME, et al. J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3. J Biol Rhythms. 2017. PMID: 29098954 Free PMC article.
224 results