Hugenholtz F - Search Results

1

A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways.

Atashgahi S, Hornung B, van der Waals MJ, da Rocha UN, Hugenholtz F, Nijsse B, Molenaar D, van Spanning R, Stams AJM, Gerritse J, Smidt H. Atashgahi S, et al. Among authors: hugenholtz f. Sci Rep. 2018 Mar 14;8(1):4490. doi: 10.1038/s41598-018-22617-x. Sci Rep. 2018. PMID: 29540736 Free PMC article.

2

Mining microbial metatranscriptomes for expression of antibiotic resistance genes under natural conditions.

Versluis D, D'Andrea MM, Ramiro Garcia J, Leimena MM, Hugenholtz F, Zhang J, Öztürk B, Nylund L, Sipkema D, van Schaik W, de Vos WM, Kleerebezem M, Smidt H, van Passel MW. Versluis D, et al. Among authors: hugenholtz f. Sci Rep. 2015 Jul 8;5:11981. doi: 10.1038/srep11981. Sci Rep. 2015. PMID: 26153129 Free PMC article.

3

Sex differences in lipid metabolism are affected by presence of the gut microbiota.

Baars A, Oosting A, Lohuis M, Koehorst M, El Aidy S, Hugenholtz F, Smidt H, Mischke M, Boekschoten MV, Verkade HJ, Garssen J, van der Beek EM, Knol J, de Vos P, van Bergenhenegouwen J, Fransen F. Baars A, et al. Among authors: hugenholtz f. Sci Rep. 2018 Sep 7;8(1):13426. doi: 10.1038/s41598-018-31695-w. Sci Rep. 2018. PMID: 30194317 Free PMC article.

4

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.

Davids M, Hugenholtz F, Martins dos Santos V, Smidt H, Kleerebezem M, Schaap PJ. Davids M, et al. Among authors: hugenholtz f. PLoS One. 2016 Jan 12;11(1):e0146423. doi: 10.1371/journal.pone.0146423. eCollection 2016. PLoS One. 2016. PMID: 26756338 Free PMC article.

5

Intestinal microbiome landscaping: insight in community assemblage and implications for microbial modulation strategies.

Shetty SA, Hugenholtz F, Lahti L, Smidt H, de Vos WM. Shetty SA, et al. Among authors: hugenholtz f. FEMS Microbiol Rev. 2017 Mar 1;41(2):182-199. doi: 10.1093/femsre/fuw045. FEMS Microbiol Rev. 2017. PMID: 28364729 Free PMC article. Review.

6

Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon.

Lange K, Hugenholtz F, Jonathan MC, Schols HA, Kleerebezem M, Smidt H, Müller M, Hooiveld GJ. Lange K, et al. Among authors: hugenholtz f. Mol Nutr Food Res. 2015 Aug;59(8):1590-602. doi: 10.1002/mnfr.201400597. Epub 2015 Jun 17. Mol Nutr Food Res. 2015. PMID: 25914036

7

Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities.

Haange SB, Oberbach A, Schlichting N, Hugenholtz F, Smidt H, von Bergen M, Till H, Seifert J. Haange SB, et al. Among authors: hugenholtz f. J Proteome Res. 2012 Nov 2;11(11):5406-17. doi: 10.1021/pr3006364. Epub 2012 Oct 22. J Proteome Res. 2012. PMID: 23016992

8

Metabolic in Vivo Labeling Highlights Differences of Metabolically Active Microbes from the Mucosal Gastrointestinal Microbiome between High-Fat and Normal Chow Diet.

Oberbach A, Haange SB, Schlichting N, Heinrich M, Lehmann S, Till H, Hugenholtz F, Kullnick Y, Smidt H, Frank K, Seifert J, Jehmlich N, von Bergen M. Oberbach A, et al. Among authors: hugenholtz f. J Proteome Res. 2017 Apr 7;16(4):1593-1604. doi: 10.1021/acs.jproteome.6b00973. Epub 2017 Mar 21. J Proteome Res. 2017. PMID: 28252966

9

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

Hugenholtz F, Davids M, Schwarz J, Müller M, Tomé D, Schaap P, Hooiveld GJEJ, Smidt H, Kleerebezem M. Hugenholtz F, et al. PLoS One. 2018 Apr 17;13(4):e0194066. doi: 10.1371/journal.pone.0194066. eCollection 2018. PLoS One. 2018. PMID: 29664912 Free PMC article.

10

Identification of Commensal Species Positively Correlated with Early Stress Responses to a Compromised Mucus Barrier.

Sovran B, Lu P, Loonen LM, Hugenholtz F, Belzer C, Stolte EH, Boekschoten MV, van Baarlen P, Smidt H, Kleerebezem M, de Vos P, Renes IB, Wells JM, Dekker J. Sovran B, et al. Among authors: hugenholtz f. Inflamm Bowel Dis. 2016 Apr;22(4):826-40. doi: 10.1097/MIB.0000000000000688. Inflamm Bowel Dis. 2016. PMID: 26926038

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