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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.
Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, Lu Z, Wang B, Tello-Ruiz MK, Piri RD, Wang N, Kim DW, Zeng Y, O'Connor CH, Li X, Gilbert AM, Baggs E, Krasileva KV, Portwood JL 2nd, Cannon EKS, Andorf CM, Manchanda N, Snodgrass SJ, Hufnagel DE, Jiang Q, Pedersen S, Syring ML, Kudrna DA, Llaca V, Fengler K, Schmitz RJ, Ross-Ibarra J, Yu J, Gent JI, Hirsch CN, Ware D, Dawe RK. Hufford MB, et al. Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289. Science. 2021. PMID: 34353948 Free PMC article.
Maize HapMap2 identifies extant variation from a genome in flux.
Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. Chia JM, et al. Among authors: hufford mb. Nat Genet. 2012 Jun 3;44(7):803-7. doi: 10.1038/ng.2313. Nat Genet. 2012. PMID: 22660545
Comparative population genomics of maize domestication and improvement.
Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J. Hufford MB, et al. Nat Genet. 2012 Jun 3;44(7):808-11. doi: 10.1038/ng.2309. Nat Genet. 2012. PMID: 22660546 Free PMC article.
Reshaping of the maize transcriptome by domestication.
Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Swanson-Wagner R, et al. Among authors: hufford mb. Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11878-83. doi: 10.1073/pnas.1201961109. Epub 2012 Jul 2. Proc Natl Acad Sci U S A. 2012. PMID: 22753482 Free PMC article.
Historical genomics of North American maize.
van Heerwaarden J, Hufford MB, Ross-Ibarra J. van Heerwaarden J, et al. Among authors: hufford mb. Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12420-5. doi: 10.1073/pnas.1209275109. Epub 2012 Jul 16. Proc Natl Acad Sci U S A. 2012. PMID: 22802642 Free PMC article.
The genomic signature of crop-wild introgression in maize.
Hufford MB, Lubinksy P, Pyhäjärvi T, Devengenzo MT, Ellstrand NC, Ross-Ibarra J. Hufford MB, et al. PLoS Genet. 2013 May;9(5):e1003477. doi: 10.1371/journal.pgen.1003477. Epub 2013 May 9. PLoS Genet. 2013. PMID: 23671421 Free PMC article.
58 results