Hu M - Search Results

1

Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.

Hu M, Zhu Y, Taylor JM, Liu JS, Qin ZS. Hu M, et al. Bioinformatics. 2012 Jan 1;28(1):63-8. doi: 10.1093/bioinformatics/btr616. Epub 2011 Nov 8. Bioinformatics. 2012. PMID: 22072384 Free PMC article.

2

Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection.

Hu M, Qin ZS. Hu M, et al. PLoS One. 2009;4(2):e4495. doi: 10.1371/journal.pone.0004495. Epub 2009 Feb 13. PLoS One. 2009. PMID: 19214232 Free PMC article.

3

On the detection and refinement of transcription factor binding sites using ChIP-Seq data.

Hu M, Yu J, Taylor JM, Chinnaiyan AM, Qin ZS. Hu M, et al. Nucleic Acids Res. 2010 Apr;38(7):2154-67. doi: 10.1093/nar/gkp1180. Epub 2010 Jan 6. Nucleic Acids Res. 2010. PMID: 20056654 Free PMC article.

4

An integrated network of androgen receptor, polycomb, and TMPRSS2-ERG gene fusions in prostate cancer progression.

Yu J, Yu J, Mani RS, Cao Q, Brenner CJ, Cao X, Wang X, Wu L, Li J, Hu M, Gong Y, Cheng H, Laxman B, Vellaichamy A, Shankar S, Li Y, Dhanasekaran SM, Morey R, Barrette T, Lonigro RJ, Tomlins SA, Varambally S, Qin ZS, Chinnaiyan AM. Yu J, et al. Among authors: hu m. Cancer Cell. 2010 May 18;17(5):443-54. doi: 10.1016/j.ccr.2010.03.018. Cancer Cell. 2010. PMID: 20478527 Free PMC article.

5

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.

Qin ZS, Yu J, Shen J, Maher CA, Hu M, Kalyana-Sundaram S, Yu J, Chinnaiyan AM. Qin ZS, et al. Among authors: hu m. BMC Bioinformatics. 2010 Jul 2;11:369. doi: 10.1186/1471-2105-11-369. BMC Bioinformatics. 2010. PMID: 20598134 Free PMC article.

6

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer.

Kim JH, Dhanasekaran SM, Prensner JR, Cao X, Robinson D, Kalyana-Sundaram S, Huang C, Shankar S, Jing X, Iyer M, Hu M, Sam L, Grasso C, Maher CA, Palanisamy N, Mehra R, Kominsky HD, Siddiqui J, Yu J, Qin ZS, Chinnaiyan AM. Kim JH, et al. Among authors: hu m. Genome Res. 2011 Jul;21(7):1028-41. doi: 10.1101/gr.119347.110. Genome Res. 2011. PMID: 21724842 Free PMC article.

7

Cooperation between Polycomb and androgen receptor during oncogenic transformation.

Zhao JC, Yu J, Runkle C, Wu L, Hu M, Wu D, Liu JS, Wang Q, Qin ZS, Yu J. Zhao JC, et al. Among authors: hu m. Genome Res. 2012 Feb;22(2):322-31. doi: 10.1101/gr.131508.111. Epub 2011 Dec 16. Genome Res. 2012. PMID: 22179855 Free PMC article.

8

Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B. Dixon JR, et al. Among authors: hu m. Nature. 2012 Apr 11;485(7398):376-80. doi: 10.1038/nature11082. Nature. 2012. PMID: 22495300 Free PMC article.

9

GPUmotif: an ultra-fast and energy-efficient motif analysis program using graphics processing units.

Zandevakili P, Hu M, Qin Z. Zandevakili P, et al. Among authors: hu m. PLoS One. 2012;7(5):e36865. doi: 10.1371/journal.pone.0036865. Epub 2012 May 25. PLoS One. 2012. PMID: 22662128 Free PMC article.

10

HiCNorm: removing biases in Hi-C data via Poisson regression.

Hu M, Deng K, Selvaraj S, Qin Z, Ren B, Liu JS. Hu M, et al. Bioinformatics. 2012 Dec 1;28(23):3131-3. doi: 10.1093/bioinformatics/bts570. Epub 2012 Sep 27. Bioinformatics. 2012. PMID: 23023982 Free PMC article.

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