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Genomics for public health and international surveillance of antimicrobial resistance.
Baker KS, Jauneikaite E, Hopkins KL, Lo SW, Sánchez-Busó L, Getino M, Howden BP, Holt KE, Musila LA, Hendriksen RS, Amoako DG, Aanensen DM, Okeke IN, Egyir B, Nunn JG, Midega JT, Feasey NA, Peacock SJ; SEDRIC Genomics Surveillance Working Group. Baker KS, et al. Among authors: hopkins kl. Lancet Microbe. 2023 Dec;4(12):e1047-e1055. doi: 10.1016/S2666-5247(23)00283-5. Epub 2023 Nov 14. Lancet Microbe. 2023. PMID: 37977162 Free article. Review.
Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities.
Jauneikaite E, Baker KS, Nunn JG, Midega JT, Hsu LY, Singh SR, Halpin AL, Hopkins KL, Price JR, Srikantiah P, Egyir B, Okeke IN, Holt KE, Peacock SJ, Feasey NA; SEDRIC Genomics Surveillance Working Group. Jauneikaite E, et al. Among authors: hopkins kl. Lancet Microbe. 2023 Dec;4(12):e1040-e1046. doi: 10.1016/S2666-5247(23)00282-3. Epub 2023 Nov 14. Lancet Microbe. 2023. PMID: 37977161 Free article. Review.
Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group.
Baker KS, Jauneikaite E, Nunn JG, Midega JT, Atun R, Holt KE, Walia K, Howden BP, Tate H, Okeke IN, Carattoli A, Hsu LY, Hopkins KL, Muloi DM, Wheeler NE, Aanensen DM, Mason LCE, Rodgus J, Hendriksen RS, Essack SY, Egyir B, Halpin AL, MacCannell DR, Campos J, Srikantiah P, Feasey NA, Peacock SJ; SEDRIC Genomics Surveillance Working Group. Baker KS, et al. Among authors: hopkins kl. Lancet Microbe. 2023 Dec;4(12):e1035-e1039. doi: 10.1016/S2666-5247(23)00281-1. Epub 2023 Nov 14. Lancet Microbe. 2023. PMID: 37977164 Free article. Review.
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.
Davies TJ, Swann J, Sheppard AE, Pickford H, Lipworth S, AbuOun M, Ellington MJ, Fowler PW, Hopkins S, Hopkins KL, Crook DW, Peto TEA, Anjum MF, Walker AS, Stoesser N. Davies TJ, et al. Among authors: hopkins kl. Microb Genom. 2023 Dec;9(12):001151. doi: 10.1099/mgen.0.001151. Microb Genom. 2023. PMID: 38100178 Free PMC article.
Investigating Pseudomonas aeruginosa population structure and frequency of cross-infection in UK cystic fibrosis clinics - a reference laboratory perspective.
Kenna DTD, Payne Z, Lee DA, Keane AM, Turton J, Zamarreño DV, Schaefer U, Hopkins KL, Meunier D, Dhillon R, Duckers J, Speight L, Turton JF. Kenna DTD, et al. Among authors: hopkins kl. J Cyst Fibros. 2023 Sep;22(5):894-900. doi: 10.1016/j.jcf.2023.05.017. Epub 2023 Jun 2. J Cyst Fibros. 2023. PMID: 37271666 Free article.
Household transmission of non-toxigenic diphtheria toxin gene-bearing Corynebacterium diphtheriae following a cluster of cutaneous cases in a specialist outpatient setting.
Fry NK, Pringle E, Newsholme W, Nicholls M, Stephenson J, Heathcock RT, Gower C, Lacy J, O'Boyle S, Litt DJ, Sheppard C, Groves N, D'Aeth J, Hopkins KL, Meunier D, De Zoysa A, Efstratiou A, Brown C, Chand M, Amirthalingam G. Fry NK, et al. Among authors: hopkins kl. J Med Microbiol. 2023 Jun;72(6). doi: 10.1099/jmm.0.001722. J Med Microbiol. 2023. PMID: 37384376
Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak of carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes.
Wan Y, Myall AC, Boonyasiri A, Bolt F, Ledda A, Mookerjee S, Weiße AY, Getino M, Turton JF, Abbas H, Prakapaite R, Sabnis A, Abdolrasouli A, Malpartida-Cardenas K, Miglietta L, Donaldson H, Gilchrist M, Hopkins KL, Ellington MJ, Otter JA, Larrouy-Maumus G, Edwards AM, Rodriguez-Manzano J, Didelot X, Barahona M, Holmes AH, Jauneikaite E, Davies F. Wan Y, et al. Among authors: hopkins kl. J Infect Dis. 2024 Jan 20:jiae019. doi: 10.1093/infdis/jiae019. Online ahead of print. J Infect Dis. 2024. PMID: 38245822
189 results