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SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: hoops s. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
PlantSimLab - a modeling and simulation web tool for plant biologists.
Ha S, Dimitrova E, Hoops S, Altarawy D, Ansariola M, Deb D, Glazebrook J, Hillmer R, Shahin H, Katagiri F, McDowell J, Megraw M, Setubal J, Tyler BM, Laubenbacher R. Ha S, et al. Among authors: hoops s. BMC Bioinformatics. 2019 Oct 21;20(1):508. doi: 10.1186/s12859-019-3094-9. BMC Bioinformatics. 2019. PMID: 31638901 Free PMC article.
Computational modeling of heterogeneity and function of CD4+ T cells.
Carbo A, Hontecillas R, Andrew T, Eden K, Mei Y, Hoops S, Bassaganya-Riera J. Carbo A, et al. Among authors: hoops s. Front Cell Dev Biol. 2014 Jul 29;2:31. doi: 10.3389/fcell.2014.00031. eCollection 2014. Front Cell Dev Biol. 2014. PMID: 25364738 Free PMC article. Review.
Supervised learning methods in modeling of CD4+ T cell heterogeneity.
Lu P, Abedi V, Mei Y, Hontecillas R, Hoops S, Carbo A, Bassaganya-Riera J. Lu P, et al. Among authors: hoops s. BioData Min. 2015 Sep 4;8:27. doi: 10.1186/s13040-015-0060-6. eCollection 2015. BioData Min. 2015. PMID: 26339293 Free PMC article.
94 results