Honavar VG - Search Results

1

Personalized Sleep Parameters Estimation from Actigraphy: A Machine Learning Approach.

Khademi A, El-Manzalawy Y, Master L, Buxton OM, Honavar VG. Khademi A, et al. Among authors: honavar vg. Nat Sci Sleep. 2019 Dec 11;11:387-399. doi: 10.2147/NSS.S220716. eCollection 2019. Nat Sci Sleep. 2019. PMID: 31849551 Free PMC article.

2

Predicting linear B-cell epitopes using string kernels.

El-Manzalawy Y, Dobbs D, Honavar V. El-Manzalawy Y, et al. J Mol Recognit. 2008 Jul-Aug;21(4):243-55. doi: 10.1002/jmr.893. J Mol Recognit. 2008. PMID: 18496882 Free PMC article.

3

On evaluating MHC-II binding peptide prediction methods.

El-Manzalawy Y, Dobbs D, Honavar V. El-Manzalawy Y, et al. PLoS One. 2008 Sep 24;3(9):e3268. doi: 10.1371/journal.pone.0003268. PLoS One. 2008. PMID: 18813344 Free PMC article.

4

Predicting flexible length linear B-cell epitopes.

El-Manzalawy Y, Dobbs D, Honavar V. El-Manzalawy Y, et al. Comput Syst Bioinformatics Conf. 2008;7:121-32. Comput Syst Bioinformatics Conf. 2008. PMID: 19642274 Free PMC article.

5

Predicting MHC-II binding affinity using multiple instance regression.

EL-Manzalawy Y, Dobbs D, Honavar V. EL-Manzalawy Y, et al. IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1067-79. doi: 10.1109/TCBB.2010.94. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20855923 Free PMC article.

6

Recent advances in B-cell epitope prediction methods.

El-Manzalawy Y, Honavar V. El-Manzalawy Y, et al. Immunome Res. 2010 Nov 3;6 Suppl 2(Suppl 2):S2. doi: 10.1186/1745-7580-6-S2-S2. Immunome Res. 2010. PMID: 21067544 Free PMC article.

7

Predicting protein-protein interface residues using local surface structural similarity.

Jordan RA, El-Manzalawy Y, Dobbs D, Honavar V. Jordan RA, et al. BMC Bioinformatics. 2012 Mar 18;13:41. doi: 10.1186/1471-2105-13-41. BMC Bioinformatics. 2012. PMID: 22424103 Free PMC article.

8

Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.

Walia RR, Caragea C, Lewis BA, Towfic F, Terribilini M, El-Manzalawy Y, Dobbs D, Honavar V. Walia RR, et al. BMC Bioinformatics. 2012 May 10;13:89. doi: 10.1186/1471-2105-13-89. BMC Bioinformatics. 2012. PMID: 22574904 Free PMC article.

9

DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction.

Xue LC, Jordan RA, El-Manzalawy Y, Dobbs D, Honavar V. Xue LC, et al. Proteins. 2014 Feb;82(2):250-67. doi: 10.1002/prot.24370. Epub 2013 Oct 17. Proteins. 2014. PMID: 23873600 Free PMC article.

10

RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.

Walia RR, Xue LC, Wilkins K, El-Manzalawy Y, Dobbs D, Honavar V. Walia RR, et al. PLoS One. 2014 May 20;9(5):e97725. doi: 10.1371/journal.pone.0097725. eCollection 2014. PLoS One. 2014. PMID: 24846307 Free PMC article.

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