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Sustainable data analysis with Snakemake.
Mölder F, Jablonski KP, Letcher B, Hall MB, Tomkins-Tinch CH, Sochat V, Forster J, Lee S, Twardziok SO, Kanitz A, Wilm A, Holtgrewe M, Rahmann S, Nahnsen S, Köster J. Mölder F, et al. Among authors: holtgrewe m. F1000Res. 2021 Jan 18;10:33. doi: 10.12688/f1000research.29032.2. eCollection 2021. F1000Res. 2021. PMID: 34035898 Free PMC article.
VarFish: comprehensive DNA variant analysis for diagnostics and research.
Holtgrewe M, Stolpe O, Nieminen M, Mundlos S, Knaus A, Kornak U, Seelow D, Segebrecht L, Spielmann M, Fischer-Zirnsak B, Boschann F, Scholl U, Ehmke N, Beule D. Holtgrewe M, et al. Nucleic Acids Res. 2020 Jul 2;48(W1):W162-W169. doi: 10.1093/nar/gkaa241. Nucleic Acids Res. 2020. PMID: 32338743 Free PMC article.
SODAR: managing multiomics study data and metadata.
Nieminen M, Stolpe O, Kuhring M, Weiner J, Pett P, Beule D, Holtgrewe M. Nieminen M, et al. Among authors: holtgrewe m. Gigascience. 2022 Dec 28;12:giad052. doi: 10.1093/gigascience/giad052. Epub 2023 Jul 27. Gigascience. 2022. PMID: 37498129 Free PMC article.
RazerS 3: faster, fully sensitive read mapping.
Weese D, Holtgrewe M, Reinert K. Weese D, et al. Among authors: holtgrewe m. Bioinformatics. 2012 Oct 15;28(20):2592-9. doi: 10.1093/bioinformatics/bts505. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923295
Genome alignment with graph data structures: a comparison.
Kehr B, Trappe K, Holtgrewe M, Reinert K. Kehr B, et al. Among authors: holtgrewe m. BMC Bioinformatics. 2014 Apr 9;15:99. doi: 10.1186/1471-2105-15-99. BMC Bioinformatics. 2014. PMID: 24712884 Free PMC article.
46 results