Holt KE - Search Results

1

Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli.

O'Brien CL, Bringer MA, Holt KE, Gordon DM, Dubois AL, Barnich N, Darfeuille-Michaud A, Pavli P. O'Brien CL, et al. Among authors: holt ke. Gut. 2017 Aug;66(8):1382-1389. doi: 10.1136/gutjnl-2015-311059. Epub 2016 Apr 20. Gut. 2017. PMID: 27196580 Free article.

2

Prediction of antibiotic resistance from antibiotic resistance genes detected in antibiotic-resistant commensal Escherichia coli using PCR or WGS.

Moran RA, Anantham S, Holt KE, Hall RM. Moran RA, et al. Among authors: holt ke. J Antimicrob Chemother. 2017 Mar 1;72(3):700-704. doi: 10.1093/jac/dkw511. J Antimicrob Chemother. 2017. PMID: 28039273

3

Analysis of Salmonella enterica serovar Typhimurium variable-number tandem-repeat data for public health investigation based on measured mutation rates and whole-genome sequence comparisons.

Dimovski K, Cao H, Wijburg OL, Strugnell RA, Mantena RK, Whipp M, Hogg G, Holt KE. Dimovski K, et al. Among authors: holt ke. J Bacteriol. 2014 Aug 15;196(16):3036-44. doi: 10.1128/JB.01820-14. Epub 2014 Jun 23. J Bacteriol. 2014. PMID: 24957617 Free PMC article.

4

Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants.

Ingle DJ, Tauschek M, Edwards DJ, Hocking DM, Pickard DJ, Azzopardi KI, Amarasena T, Bennett-Wood V, Pearson JS, Tamboura B, Antonio M, Ochieng JB, Oundo J, Mandomando I, Qureshi S, Ramamurthy T, Hossain A, Kotloff KL, Nataro JP, Dougan G, Levine MM, Robins-Browne RM, Holt KE. Ingle DJ, et al. Among authors: holt ke. Nat Microbiol. 2016 Jan 18;1:15010. doi: 10.1038/nmicrobiol.2015.10. Nat Microbiol. 2016. PMID: 27571974

5

Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?

Robins-Browne RM, Holt KE, Ingle DJ, Hocking DM, Yang J, Tauschek M. Robins-Browne RM, et al. Among authors: holt ke. Front Cell Infect Microbiol. 2016 Nov 18;6:141. doi: 10.3389/fcimb.2016.00141. eCollection 2016. Front Cell Infect Microbiol. 2016. PMID: 27917373 Free PMC article. Review.

6

Identification of Klebsiella capsule synthesis loci from whole genome data.

Wyres KL, Wick RR, Gorrie C, Jenney A, Follador R, Thomson NR, Holt KE. Wyres KL, et al. Among authors: holt ke. Microb Genom. 2016 Dec 12;2(12):e000102. doi: 10.1099/mgen.0.000102. eCollection 2016 Dec. Microb Genom. 2016. PMID: 28348840 Free PMC article.

7

Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa.

Ingle DJ, Levine MM, Kotloff KL, Holt KE, Robins-Browne RM. Ingle DJ, et al. Among authors: holt ke. Nat Microbiol. 2018 Sep;3(9):1063-1073. doi: 10.1038/s41564-018-0217-4. Epub 2018 Aug 20. Nat Microbiol. 2018. PMID: 30127495 Free PMC article.

8

Tracking the establishment of local endemic populations of an emergent enteric pathogen.

Holt KE, Thieu Nga TV, Thanh DP, Vinh H, Kim DW, Vu Tra MP, Campbell JI, Hoang NV, Vinh NT, Minh PV, Thuy CT, Nga TT, Thompson C, Dung TT, Nhu NT, Vinh PV, Tuyet PT, Phuc HL, Lien NT, Phu BD, Ai NT, Tien NM, Dong N, Parry CM, Hien TT, Farrar JJ, Parkhill J, Dougan G, Thomson NR, Baker S. Holt KE, et al. Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17522-7. doi: 10.1073/pnas.1308632110. Epub 2013 Sep 30. Proc Natl Acad Sci U S A. 2013. PMID: 24082120 Free PMC article.

9

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm.

Hawkey J, Edwards DJ, Dimovski K, Hiley L, Billman-Jacobe H, Hogg G, Holt KE. Hawkey J, et al. Among authors: holt ke. BMC Genomics. 2013 Nov 19;14:800. doi: 10.1186/1471-2164-14-800. BMC Genomics. 2013. PMID: 24245509 Free PMC article.

10

Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE. Wick RR, et al. Among authors: holt ke. Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22. Bioinformatics. 2015. PMID: 26099265 Free PMC article.

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