Holstege FCP - Search Results

1

Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma.

DeMartino J, Meister MT, Visser LL, Brok M, Groot Koerkamp MJA, Wezenaar AKL, Hiemcke-Jiwa LS, de Souza T, Merks JHM, Rios AC, Holstege FCP, Margaritis T, Drost J. DeMartino J, et al. Among authors: holstege fcp. Nat Commun. 2023 May 27;14(1):3074. doi: 10.1038/s41467-023-38886-8. Nat Commun. 2023. PMID: 37244912 Free PMC article.

2

Maintenance of head and neck tumor gene expression profiles upon lymph node metastasis.

Roepman P, de Jager A, Groot Koerkamp MJ, Kummer JA, Slootweg PJ, Holstege FC. Roepman P, et al. Cancer Res. 2006 Dec 1;66(23):11110-4. doi: 10.1158/0008-5472.CAN-06-3161. Cancer Res. 2006. PMID: 17145852

3

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

van Bakel H, van Werven FJ, Radonjic M, Brok MO, van Leenen D, Holstege FC, Timmers HT. van Bakel H, et al. Nucleic Acids Res. 2008 Mar;36(4):e21. doi: 10.1093/nar/gkm1144. Epub 2008 Jan 7. Nucleic Acids Res. 2008. PMID: 18180247 Free PMC article.

4

cDNA microarray profiles of canine mammary tumour cell lines reveal deregulated pathways pertaining to their phenotype.

Rao NA, van Wolferen ME, van den Ham R, van Leenen D, Groot Koerkamp MJ, Holstege FC, Mol JA. Rao NA, et al. Anim Genet. 2008 Aug;39(4):333-45. doi: 10.1111/j.1365-2052.2008.01733.x. Epub 2008 May 6. Anim Genet. 2008. PMID: 18462483

5

Poised RNA polymerase II gives pause for thought.

Margaritis T, Holstege FC. Margaritis T, et al. Cell. 2008 May 16;133(4):581-4. doi: 10.1016/j.cell.2008.04.027. Cell. 2008. PMID: 18485867 Free article. Review.

6

Adaptable gene-specific dye bias correction for two-channel DNA microarrays.

Margaritis T, Lijnzaad P, van Leenen D, Bouwmeester D, Kemmeren P, van Hooff SR, Holstege FC. Margaritis T, et al. Mol Syst Biol. 2009;5:266. doi: 10.1038/msb.2009.21. Epub 2009 Apr 28. Mol Syst Biol. 2009. PMID: 19401678 Free PMC article.

7

Cellular host transcriptional responses to influenza A virus in chicken tracheal organ cultures differ from responses in in vivo infected trachea.

Reemers SS, Groot Koerkamp MJ, Holstege FC, van Eden W, Vervelde L. Reemers SS, et al. Vet Immunol Immunopathol. 2009 Dec 15;132(2-4):91-100. doi: 10.1016/j.vetimm.2009.04.021. Epub 2009 May 4. Vet Immunol Immunopathol. 2009. PMID: 19447504

8

Tight control of MEK-ERK activation is essential in regulating proliferation, survival, and cytokine production of CD34+-derived neutrophil progenitors.

Geest CR, Buitenhuis M, Groot Koerkamp MJ, Holstege FC, Vellenga E, Coffer PJ. Geest CR, et al. Blood. 2009 Oct 15;114(16):3402-12. doi: 10.1182/blood-2008-08-175141. Epub 2009 Aug 10. Blood. 2009. PMID: 19667405 Free article.

9

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ, Brabers N, Brok MO, Lenstra TL, Fiedler D, Fokkens L, Aldecoa R, Apweiler E, Taliadouros V, Sameith K, van de Pasch LA, van Hooff SR, Bakker LV, Krogan NJ, Snel B, Holstege FC. van Wageningen S, et al. Cell. 2010 Dec 10;143(6):991-1004. doi: 10.1016/j.cell.2010.11.021. Cell. 2010. PMID: 21145464 Free PMC article.

10

The specificity and topology of chromatin interaction pathways in yeast.

Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NA, Margaritis T, van de Pasch LA, van Heesch SA, Brok MO, Groot Koerkamp MJ, Ko CW, van Leenen D, Sameith K, van Hooff SR, Lijnzaad P, Kemmeren P, Hentrich T, Kobor MS, Buratowski S, Holstege FC. Lenstra TL, et al. Mol Cell. 2011 May 20;42(4):536-49. doi: 10.1016/j.molcel.2011.03.026. Mol Cell. 2011. PMID: 21596317 Free PMC article.

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