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Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states.
Rodriguez-Algarra F, Seaborne RAE, Danson AF, Yildizoglu S, Yoshikawa H, Law PP, Ahmad Z, Maudsley VA, Brew A, Holmes N, Ochôa M, Hodgkinson A, Marzi SJ, Pradeepa MM, Loose M, Holland ML, Rakyan VK. Rodriguez-Algarra F, et al. Among authors: holmes n. Genome Biol. 2022 Feb 14;23(1):54. doi: 10.1186/s13059-022-02617-x. Genome Biol. 2022. PMID: 35164830 Free PMC article.
minoTour, real-time monitoring and analysis for nanopore sequencers.
Munro R, Santos R, Payne A, Forey T, Osei S, Holmes N, Loose M. Munro R, et al. Among authors: holmes n. Bioinformatics. 2022 Jan 27;38(4):1133-1135. doi: 10.1093/bioinformatics/btab780. Bioinformatics. 2022. PMID: 34791062 Free PMC article.
Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: holmes n. Nat Methods. 2019 Dec;16(12):1297-1305. doi: 10.1038/s41592-019-0617-2. Epub 2019 Nov 18. Nat Methods. 2019. PMID: 31740818 Free PMC article.
Rapid-CNS2: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study.
Patel A, Dogan H, Payne A, Krause E, Sievers P, Schoebe N, Schrimpf D, Blume C, Stichel D, Holmes N, Euskirchen P, Hench J, Frank S, Rosenstiel-Goidts V, Ratliff M, Etminan N, Unterberg A, Dieterich C, Herold-Mende C, Pfister SM, Wick W, Loose M, von Deimling A, Sill M, Jones DTW, Schlesner M, Sahm F. Patel A, et al. Among authors: holmes n. Acta Neuropathol. 2022 May;143(5):609-612. doi: 10.1007/s00401-022-02415-6. Epub 2022 Mar 31. Acta Neuropathol. 2022. PMID: 35357562 Free PMC article. No abstract available.
The UK Leicester COVID-19 'exceedance' May-July 2020: An analysis of hospitalised cases.
Tang JW, Bird PW, Holmes CW, Nicoara DC, Woltmann G, Haldar P, Holmes N, Carlile M, Moore C, McClure P, Loose M. Tang JW, et al. Among authors: holmes cw, holmes n. J Infect. 2021 Jul;83(1):e5-e7. doi: 10.1016/j.jinf.2021.05.028. Epub 2021 May 29. J Infect. 2021. PMID: 34062181 Free PMC article. No abstract available.
Telomere-to-telomere assembly of a complete human X chromosome.
Miga KH, Koren S, Rhie A, Vollger MR, Gershman A, Bzikadze A, Brooks S, Howe E, Porubsky D, Logsdon GA, Schneider VA, Potapova T, Wood J, Chow W, Armstrong J, Fredrickson J, Pak E, Tigyi K, Kremitzki M, Markovic C, Maduro V, Dutra A, Bouffard GG, Chang AM, Hansen NF, Wilfert AB, Thibaud-Nissen F, Schmitt AD, Belton JM, Selvaraj S, Dennis MY, Soto DC, Sahasrabudhe R, Kaya G, Quick J, Loman NJ, Holmes N, Loose M, Surti U, Risques RA, Graves Lindsay TA, Fulton R, Hall I, Paten B, Howe K, Timp W, Young A, Mullikin JC, Pevzner PA, Gerton JL, Sullivan BA, Eichler EE, Phillippy AM. Miga KH, et al. Among authors: holmes n. Nature. 2020 Sep;585(7823):79-84. doi: 10.1038/s41586-020-2547-7. Epub 2020 Jul 14. Nature. 2020. PMID: 32663838 Free PMC article.
Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.
Workman RE, Tang AD, Tang PS, Jain M, Tyson JR, Razaghi R, Zuzarte PC, Gilpatrick T, Payne A, Quick J, Sadowski N, Holmes N, de Jesus JG, Jones KL, Soulette CM, Snutch TP, Loman N, Paten B, Loose M, Simpson JT, Olsen HE, Brooks AN, Akeson M, Timp W. Workman RE, et al. Among authors: holmes n. Nat Methods. 2020 Jan;17(1):114. doi: 10.1038/s41592-019-0697-z. Nat Methods. 2020. PMID: 31819268
646 results