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The CCP4 suite: integrative software for macromolecular crystallography.
Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30.
Acta Crystallogr D Struct Biol. 2023.
PMID: 37259835
Free PMC article.
Automating tasks in protein structure determination with the clipper python module.
McNicholas S, Croll T, Burnley T, Palmer CM, Hoh SW, Jenkins HT, Dodson E, Cowtan K, Agirre J.
McNicholas S, et al. Among authors: hoh sw.
Protein Sci. 2018 Jan;27(1):207-216. doi: 10.1002/pro.3299. Epub 2017 Nov 6.
Protein Sci. 2018.
PMID: 28901669
Free PMC article.
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Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
Hoh SW, Burnley T, Cowtan K.
Hoh SW, et al.
Acta Crystallogr D Struct Biol. 2020 Jun 1;76(Pt 6):531-541. doi: 10.1107/S2059798320005513. Epub 2020 May 29.
Acta Crystallogr D Struct Biol. 2020.
PMID: 32496215
Free PMC article.
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Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA Jr, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W.
Lawson CL, et al. Among authors: hoh sw.
Nat Methods. 2021 Feb;18(2):156-164. doi: 10.1038/s41592-020-01051-w. Epub 2021 Feb 4.
Nat Methods. 2021.
PMID: 33542514
Free PMC article.
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Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.
Lawson CL, Kryshtafovych A, Pintilie GD, Burley SK, Černý J, Chen VB, Emsley P, Gobbi A, Joachimiak A, Noreng S, Prisant M, Read RJ, Richardson JS, Rohou AL, Schneider B, Sellers BD, Shao C, Sourial E, Williams CI, Williams CJ, Yang Y, Abbaraju V, Afonine PV, Baker ML, Bond PS, Blundell TL, Burnley T, Campbell A, Cao R, Cheng J, Chojnowski G, Cowtan KD, DiMaio F, Esmaeeli R, Giri N, Grubmüller H, Hoh SW, Hou J, Hryc CF, Hunte C, Igaev M, Joseph AP, Kao WC, Kihara D, Kumar D, Lang L, Lin S, Maddhuri Venkata Subramaniya SR, Mittal S, Mondal A, Moriarty NW, Muenks A, Murshudov GN, Nicholls RA, Olek M, Palmer CM, Perez A, Pohjolainen E, Pothula KR, Rowley CN, Sarkar D, Schäfer LU, Schlicksup CJ, Schröder GF, Shekhar M, Si D, Singharoy A, Sobolev OV, Terashi G, Vaiana AC, Vedithi SC, Verburgt J, Wang X, Warshamanage R, Winn MD, Weyand S, Yamashita K, Zhao M, Schmid MF, Berman HM, Chiu W.
Lawson CL, et al. Among authors: hoh sw.
Res Sq [Preprint]. 2024 Jan 25:rs.3.rs-3864137. doi: 10.21203/rs.3.rs-3864137/v1.
Res Sq. 2024.
PMID: 38343795
Free PMC article.
Preprint.
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