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Vienna RNA secondary structure server.
Hofacker IL. Hofacker IL. Nucleic Acids Res. 2003 Jul 1;31(13):3429-31. doi: 10.1093/nar/gkg599. Nucleic Acids Res. 2003. PMID: 12824340 Free PMC article.
Alignment of RNA base pairing probability matrices.
Hofacker IL, Bernhart SH, Stadler PF. Hofacker IL, et al. Bioinformatics. 2004 Sep 22;20(14):2222-7. doi: 10.1093/bioinformatics/bth229. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073017
Local RNA base pairing probabilities in large sequences.
Bernhart SH, Hofacker IL, Stadler PF. Bernhart SH, et al. Among authors: hofacker il. Bioinformatics. 2006 Mar 1;22(5):614-5. doi: 10.1093/bioinformatics/btk014. Epub 2005 Dec 20. Bioinformatics. 2006. PMID: 16368769
Thermodynamics of RNA-RNA binding.
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, Hofacker IL. Mückstein U, et al. Among authors: hofacker il. Bioinformatics. 2006 May 15;22(10):1177-82. doi: 10.1093/bioinformatics/btl024. Epub 2006 Jan 29. Bioinformatics. 2006. PMID: 16446276
The expansion of the metazoan microRNA repertoire.
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF; Students of Bioinformatics Computer Labs 2004 and 2005. Hertel J, et al. Among authors: hofacker il. BMC Genomics. 2006 Feb 15;7:25. doi: 10.1186/1471-2164-7-25. BMC Genomics. 2006. PMID: 16480513 Free PMC article.
159 results