Hershberg R - Search Results

1

Freshwater microbial metagenomes sampled across different water body characteristics, space and time in Israel.

Al-Ashhab A, Marmen S, Schweitzer-Natan O, Bolotin E, Patil H, Viner-Mozzini D, Aharonovich D, Hershberg R, Minz D, Carmeli S, Cytryn E, Sukenik A, Sher D. Al-Ashhab A, et al. Among authors: hershberg r. Sci Data. 2022 Oct 26;9(1):652. doi: 10.1038/s41597-022-01749-w. Sci Data. 2022. PMID: 36289228 Free PMC article.

2

Selection on codon bias.

Hershberg R, Petrov DA. Hershberg R, et al. Annu Rev Genet. 2008;42:287-99. doi: 10.1146/annurev.genet.42.110807.091442. Annu Rev Genet. 2008. PMID: 18983258 Review.

3

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites.

Hershberg R, Bejerano G, Santos-Zavaleta A, Margalit H. Hershberg R, et al. Nucleic Acids Res. 2001 Jan 1;29(1):277. doi: 10.1093/nar/29.1.277. Nucleic Acids Res. 2001. PMID: 11125111 Free PMC article.

4

Evidence that mutation is universally biased towards AT in bacteria.

Hershberg R, Petrov DA. Hershberg R, et al. PLoS Genet. 2010 Sep 9;6(9):e1001115. doi: 10.1371/journal.pgen.1001115. PLoS Genet. 2010. PMID: 20838599 Free PMC article.

5

General rules for optimal codon choice.

Hershberg R, Petrov DA. Hershberg R, et al. PLoS Genet. 2009 Jul;5(7):e1000556. doi: 10.1371/journal.pgen.1000556. Epub 2009 Jul 10. PLoS Genet. 2009. PMID: 19593368 Free PMC article.

6

Strong purifying selection at synonymous sites in D. melanogaster.

Lawrie DS, Messer PW, Hershberg R, Petrov DA. Lawrie DS, et al. Among authors: hershberg r. PLoS Genet. 2013 May;9(5):e1003527. doi: 10.1371/journal.pgen.1003527. Epub 2013 May 30. PLoS Genet. 2013. PMID: 23737754 Free PMC article.

7

Co-evolution of transcription factors and their targets depends on mode of regulation.

Hershberg R, Margalit H. Hershberg R, et al. Genome Biol. 2006;7(7):R62. doi: 10.1186/gb-2006-7-7-r62. Genome Biol. 2006. PMID: 16859509 Free PMC article.

8

High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography.

Hershberg R, Lipatov M, Small PM, Sheffer H, Niemann S, Homolka S, Roach JC, Kremer K, Petrov DA, Feldman MW, Gagneux S. Hershberg R, et al. PLoS Biol. 2008 Dec 16;6(12):e311. doi: 10.1371/journal.pbio.0060311. PLoS Biol. 2008. PMID: 19090620 Free PMC article.

9

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence.

Padalon-Brauch G, Hershberg R, Elgrably-Weiss M, Baruch K, Rosenshine I, Margalit H, Altuvia S. Padalon-Brauch G, et al. Among authors: hershberg r. Nucleic Acids Res. 2008 Apr;36(6):1913-27. doi: 10.1093/nar/gkn050. Epub 2008 Feb 11. Nucleic Acids Res. 2008. PMID: 18267966 Free PMC article.

10

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli.

Argaman L, Hershberg R, Vogel J, Bejerano G, Wagner EG, Margalit H, Altuvia S. Argaman L, et al. Among authors: hershberg r. Curr Biol. 2001 Jun 26;11(12):941-50. doi: 10.1016/s0960-9822(01)00270-6. Curr Biol. 2001. PMID: 11448770 Free article.

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