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Profiling cellular diversity in sponges informs animal cell type and nervous system evolution.
Science. 2021 Nov 5;374(6568):717-723. doi: 10.1126/science.abj2949. Epub 2021 Nov 4.
Science. 2021.
PMID: 34735222
Free PMC article.
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.
Cantalapiedra CP, Hernández-Plaza A, Letunic I, Bork P, Huerta-Cepas J.
Cantalapiedra CP, et al. Among authors: hernandez plaza a.
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
Mol Biol Evol. 2021.
PMID: 34597405
Free PMC article.
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PhyloCloud: an online platform for making sense of phylogenomic data.
Deng Z, Botas J, Cantalapiedra CP, Hernández-Plaza A, Burguet-Castell J, Huerta-Cepas J.
Deng Z, et al. Among authors: hernandez plaza a.
Nucleic Acids Res. 2022 Jul 5;50(W1):W577-W582. doi: 10.1093/nar/gkac324.
Nucleic Acids Res. 2022.
PMID: 35544233
Free PMC article.
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Huerta-Cepas J, Szklarczyk D, Heller D, Hernández-Plaza A, Forslund SK, Cook H, Mende DR, Letunic I, Rattei T, Jensen LJ, von Mering C, Bork P.
Huerta-Cepas J, et al. Among authors: hernandez plaza a.
Nucleic Acids Res. 2019 Jan 8;47(D1):D309-D314. doi: 10.1093/nar/gky1085.
Nucleic Acids Res. 2019.
PMID: 30418610
Free PMC article.
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proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.
Mende DR, Letunic I, Maistrenko OM, Schmidt TSB, Milanese A, Paoli L, Hernández-Plaza A, Orakov AN, Forslund SK, Sunagawa S, Zeller G, Huerta-Cepas J, Coelho LP, Bork P.
Mende DR, et al. Among authors: hernandez plaza a.
Nucleic Acids Res. 2020 Jan 8;48(D1):D621-D625. doi: 10.1093/nar/gkz1002.
Nucleic Acids Res. 2020.
PMID: 31647096
Free PMC article.
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The Quest for Orthologs benchmark service and consensus calls in 2020.
Altenhoff AM, Garrayo-Ventas J, Cosentino S, Emms D, Glover NM, Hernández-Plaza A, Nevers Y, Sundesha V, Szklarczyk D, Fernández JM, Codó L, For Orthologs Consortium TQ, Gelpi JL, Huerta-Cepas J, Iwasaki W, Kelly S, Lecompte O, Muffato M, Martin MJ, Capella-Gutierrez S, Thomas PD, Sonnhammer E, Dessimoz C.
Altenhoff AM, et al. Among authors: hernandez plaza a.
Nucleic Acids Res. 2020 Jul 2;48(W1):W538-W545. doi: 10.1093/nar/gkaa308.
Nucleic Acids Res. 2020.
PMID: 32374845
Free PMC article.
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Functional and evolutionary significance of unknown genes from uncultivated taxa.
Rodríguez Del Río Á, Giner-Lamia J, Cantalapiedra CP, Botas J, Deng Z, Hernández-Plaza A, Munar-Palmer M, Santamaría-Hernando S, Rodríguez-Herva JJ, Ruscheweyh HJ, Paoli L, Schmidt TSB, Sunagawa S, Bork P, López-Solanilla E, Coelho LP, Huerta-Cepas J.
Rodríguez Del Río Á, et al. Among authors: hernandez plaza a.
Nature. 2024 Feb;626(7998):377-384. doi: 10.1038/s41586-023-06955-z. Epub 2023 Dec 18.
Nature. 2024.
PMID: 38109938
Free PMC article.
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eggNOG 6.0: enabling comparative genomics across 12 535 organisms.
Hernández-Plaza A, Szklarczyk D, Botas J, Cantalapiedra CP, Giner-Lamia J, Mende DR, Kirsch R, Rattei T, Letunic I, Jensen LJ, Bork P, von Mering C, Huerta-Cepas J.
Hernández-Plaza A, et al.
Nucleic Acids Res. 2023 Jan 6;51(D1):D389-D394. doi: 10.1093/nar/gkac1022.
Nucleic Acids Res. 2023.
PMID: 36399505
Free PMC article.
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