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Deep learning embedder method and tool for mass spectra similarity search.
Qin C, Luo X, Deng C, Shu K, Zhu W, Griss J, Hermjakob H, Bai M, Perez-Riverol Y. Qin C, et al. Among authors: hermjakob h. J Proteomics. 2021 Feb 10;232:104070. doi: 10.1016/j.jprot.2020.104070. Epub 2020 Dec 8. J Proteomics. 2021. PMID: 33307250 Free PMC article.
The proteomics standards initiative.
Orchard S, Hermjakob H, Apweiler R. Orchard S, et al. Among authors: hermjakob h. Proteomics. 2003 Jul;3(7):1374-6. doi: 10.1002/pmic.200300496. Proteomics. 2003. PMID: 12872238
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, Lappe M, Li Y, Zeng R, Rana D, Nikolski M, Husi H, Brun C, Shanker K, Grant SG, Sander C, Bork P, Zhu W, Pandey A, Brazma A, Jacq B, Vidal M, Sherman D, Legrain P, Cesareni G, Xenarios I, Eisenberg D, Steipe B, Hogue C, Apweiler R. Hermjakob H, et al. Nat Biotechnol. 2004 Feb;22(2):177-83. doi: 10.1038/nbt926. Nat Biotechnol. 2004. PMID: 14755292
A common open representation of mass spectrometry data and its application to proteomics research.
Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Pedrioli PG, et al. Among authors: hermjakob h. Nat Biotechnol. 2004 Nov;22(11):1459-66. doi: 10.1038/nbt1031. Nat Biotechnol. 2004. PMID: 15529173
Current status of proteomic standards development.
Orchard S, Taylor C, Hermjakob H, Zhu W, Julian R, Apweiler R. Orchard S, et al. Among authors: hermjakob h. Expert Rev Proteomics. 2004 Aug;1(2):179-83. doi: 10.1586/14789450.1.2.179. Expert Rev Proteomics. 2004. PMID: 15966812 Review.
Second proteomics standards initiative spring workshop.
Orchard S, Hermjakob H, Taylor CF, Potthast F, Jones P, Zhu W, Julian RK Jr, Apweiler R. Orchard S, et al. Among authors: hermjakob h. Expert Rev Proteomics. 2005 Jun;2(3):287-9. doi: 10.1586/14789450.2.3.287. Expert Rev Proteomics. 2005. PMID: 16000075 No abstract available.
287 results