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Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona.
Bowers JR, Yaglom HD, Hepp CM, Pfeiffer A, Jasso-Selles D, Bratsch N, Nashio JT, Folkerts M, Wilbur SM, French C, Lemmer D, Fitzpatrick K, Huynh T, Komatsu K, McAuley JB, Close R, Engelthaler DM. Bowers JR, et al. Among authors: hepp cm. mSphere. 2023 Apr 20;8(2):e0065922. doi: 10.1128/msphere.00659-22. Epub 2023 Feb 28. mSphere. 2023. PMID: 36853059 Free PMC article.
Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS. Driebe EM, et al. Among authors: hepp cm. PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015. PLoS One. 2015. PMID: 26161978 Free PMC article.
Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever.
Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR 3rd, Chiller T, Barker B, Keim P, Litvintseva AP. Engelthaler DM, et al. Among authors: hepp cm. mBio. 2016 Apr 26;7(2):e00550-16. doi: 10.1128/mBio.00550-16. mBio. 2016. PMID: 27118594 Free PMC article.
NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.
Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CHD, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, Keim P. Sahl JW, et al. Among authors: hepp cm. Microb Genom. 2016 Aug 25;2(8):e000074. doi: 10.1099/mgen.0.000074. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348869 Free PMC article.
Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest.
Roe CC, Bowers J, Oltean H, DeBess E, Dufresne PJ, McBurney S, Overy DP, Wanke B, Lysen C, Chiller T, Meyer W, Thompson GR 3rd, Lockhart SR, Hepp CM, Engelthaler DM. Roe CC, et al. Among authors: hepp cm. mSphere. 2018 Jan 17;3(1):e00499-17. doi: 10.1128/mSphere.00499-17. eCollection 2018 Jan-Feb. mSphere. 2018. PMID: 29359190 Free PMC article.
Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest.
Hepp CM, Cocking JH, Valentine M, Young SJ, Damian D, Samuels-Crow KE, Sheridan K, Fofanov VY, Furstenau TN, Busch JD, Erickson DE, Lancione RC, Smith K, Will J, Townsend J, Keim PS, Engelthaler DM. Hepp CM, et al. PLoS One. 2018 Nov 26;13(11):e0205801. doi: 10.1371/journal.pone.0205801. eCollection 2018. PLoS One. 2018. PMID: 30475820 Free PMC article.
An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona.
Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, Watts TD, Komatsu KK, Waddell V, Lim ES, Caporaso JG, Engelthaler DM, Worobey M, Keim P. Ladner JT, et al. Among authors: hepp cm. mBio. 2020 Sep 4;11(5):e02107-20. doi: 10.1128/mBio.02107-20. mBio. 2020. PMID: 32887735 Free PMC article.
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity.
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Simard A, Engelthaler DM, Worobey M, Keim P, Caporaso JG. Bolyen E, et al. Among authors: hepp cm. F1000Res. 2020 Jun 29;9:657. doi: 10.12688/f1000research.24751.2. eCollection 2020. F1000Res. 2020. PMID: 33500774 Free PMC article.
St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event.
Ridenour CL, Cocking J, Poidmore S, Erickson D, Brock B, Valentine M, Roe CC, Young SJ, Henke JA, Hung KY, Wittie J, Stefanakos E, Sumner C, Ruedas M, Raman V, Seaton N, Bendik W, Hornstra O'Neill HM, Sheridan K, Centner H, Lemmer D, Fofanov V, Smith K, Will J, Townsend J, Foster JT, Keim PS, Engelthaler DM, Hepp CM. Ridenour CL, et al. Among authors: hepp cm. Front Genet. 2021 Jun 8;12:667895. doi: 10.3389/fgene.2021.667895. eCollection 2021. Front Genet. 2021. PMID: 34168675 Free PMC article.
Complete mitochondrial genome of Onchocerca lupi (Nematoda, Onchocercidae).
Roe CC, Urbanz J, Andrews L, Verocai GG, Engelthaler DM, Hepp CM, Sahl JW. Roe CC, et al. Among authors: hepp cm. Mitochondrial DNA B Resour. 2021 Aug 5;6(9):2572-2574. doi: 10.1080/23802359.2021.1960211. eCollection 2021. Mitochondrial DNA B Resour. 2021. PMID: 34377832 Free PMC article.
49 results