Henry CS - Search Results

1

A genomic catalog of Earth's microbiomes.

Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, Wu D, Paez-Espino D, Chen IM, Huntemann M, Palaniappan K, Ladau J, Mukherjee S, Reddy TBK, Nielsen T, Kirton E, Faria JP, Edirisinghe JN, Henry CS, Jungbluth SP, Chivian D, Dehal P, Wood-Charlson EM, Arkin AP, Tringe SG, Visel A; IMG/M Data Consortium; Woyke T, Mouncey NJ, Ivanova NN, Kyrpides NC, Eloe-Fadrosh EA. Nayfach S, et al. Among authors: henry cs. Nat Biotechnol. 2021 Apr;39(4):499-509. doi: 10.1038/s41587-020-0718-6. Epub 2020 Nov 9. Nat Biotechnol. 2021. PMID: 33169036 Free PMC article.

2

High-throughput generation, optimization and analysis of genome-scale metabolic models.

Henry CS, DeJongh M, Best AA, Frybarger PM, Linsay B, Stevens RL. Henry CS, et al. Nat Biotechnol. 2010 Sep;28(9):977-82. doi: 10.1038/nbt.1672. Epub 2010 Aug 29. Nat Biotechnol. 2010. PMID: 20802497

3

Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models.

Faria JP, Overbeek R, Xia F, Rocha M, Rocha I, Henry CS. Faria JP, et al. Among authors: henry cs. Brief Bioinform. 2014 Jul;15(4):592-611. doi: 10.1093/bib/bbs071. Brief Bioinform. 2014. PMID: 23422247

4

Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter.

Fagen JR, Leonard MT, McCullough CM, Edirisinghe JN, Henry CS, Davis MJ, Triplett EW. Fagen JR, et al. Among authors: henry cs. PLoS One. 2014 Jan 8;9(1):e84469. doi: 10.1371/journal.pone.0084469. eCollection 2014. PLoS One. 2014. PMID: 24416233 Free PMC article.

5

Tapping the wealth of microbial data in high-throughput metabolic model reconstruction.

Colasanti R, Edirisinghe JN, Khazaei T, Faria JP, Seaver S, Xia F, Henry C. Colasanti R, et al. Methods Mol Biol. 2014;1191:19-45. doi: 10.1007/978-1-4939-1170-7_2. Methods Mol Biol. 2014. PMID: 25178782

6

From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model.

Cuevas DA, Edirisinghe J, Henry CS, Overbeek R, O'Connell TG, Edwards RA. Cuevas DA, et al. Among authors: henry cs. Front Microbiol. 2016 Jun 17;7:907. doi: 10.3389/fmicb.2016.00907. eCollection 2016. Front Microbiol. 2016. PMID: 27379044 Free PMC article.

7

Modeling central metabolism and energy biosynthesis across microbial life.

Edirisinghe JN, Weisenhorn P, Conrad N, Xia F, Overbeek R, Stevens RL, Henry CS. Edirisinghe JN, et al. Among authors: henry cs. BMC Genomics. 2016 Aug 8;17:568. doi: 10.1186/s12864-016-2887-8. BMC Genomics. 2016. PMID: 27502787 Free PMC article.

8

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.

Faria JP, Davis JJ, Edirisinghe JN, Taylor RC, Weisenhorn P, Olson RD, Stevens RL, Rocha M, Rocha I, Best AA, DeJongh M, Tintle NL, Parrello B, Overbeek R, Henry CS. Faria JP, et al. Among authors: henry cs. Front Microbiol. 2016 Nov 24;7:1819. doi: 10.3389/fmicb.2016.01819. eCollection 2016. Front Microbiol. 2016. PMID: 27933038 Free PMC article.

9

Enabling comparative modeling of closely related genomes: example genus Brucella.

Faria JP, Edirisinghe JN, Davis JJ, Disz T, Hausmann A, Henry CS, Olson R, Overbeek RA, Pusch GD, Shukla M, Vonstein V, Wattam AR. Faria JP, et al. Among authors: henry cs. 3 Biotech. 2015 Feb;5(1):101-105. doi: 10.1007/s13205-014-0202-4. Epub 2014 Mar 8. 3 Biotech. 2015. PMID: 28324362 Free PMC article.

10

Reconstruction and Analysis of Central Metabolism in Microbes.

Edirisinghe JN, Faria JP, Harris NL, Allen BH, Henry CS. Edirisinghe JN, et al. Among authors: henry cs. Methods Mol Biol. 2018;1716:111-129. doi: 10.1007/978-1-4939-7528-0_5. Methods Mol Biol. 2018. PMID: 29222751

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