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Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
Küster H, Becker A, Firnhaber C, Hohnjec N, Manthey K, Perlick AM, Bekel T, Dondrup M, Henckel K, Goesmann A, Meyer F, Wipf D, Requena N, Hildebrandt U, Hampp R, Nehls U, Krajinski F, Franken P, Pühler A. Küster H, et al. Among authors: henckel k. Phytochemistry. 2007 Jan;68(1):19-32. doi: 10.1016/j.phytochem.2006.09.026. Epub 2006 Nov 1. Phytochemistry. 2007. PMID: 17081576 Review.
EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.
Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A. Dondrup M, et al. Among authors: henckel k. BMC Bioinformatics. 2009 Feb 6;10:50. doi: 10.1186/1471-2105-10-50. BMC Bioinformatics. 2009. PMID: 19200358 Free PMC article.
TRUNCATULIX--a data warehouse for the legume community.
Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A. Henckel K, et al. BMC Plant Biol. 2009 Feb 11;9:19. doi: 10.1186/1471-2229-9-19. BMC Plant Biol. 2009. PMID: 19210766 Free PMC article.
The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A. Bekel T, et al. Among authors: henckel k. J Biotechnol. 2009 Mar 10;140(1-2):3-12. doi: 10.1016/j.jbiotec.2009.01.006. J Biotechnol. 2009. PMID: 19297685
An expressed sequence tag analysis of the intertidal brown seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in response to abiotic stressors.
Pearson GA, Hoarau G, Lago-Leston A, Coyer JA, Kube M, Reinhardt R, Henckel K, Serrão ET, Corre E, Olsen JL. Pearson GA, et al. Among authors: henckel k. Mar Biotechnol (NY). 2010 Apr;12(2):195-213. doi: 10.1007/s10126-009-9208-z. Epub 2009 Jul 17. Mar Biotechnol (NY). 2010. PMID: 19609612