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Type I IFNs promote cancer cell stemness by triggering the epigenetic regulator KDM1B.
Musella M, Guarracino A, Manduca N, Galassi C, Ruggiero E, Potenza A, Maccafeo E, Manic G, Mattiello L, Soliman Abdel Rehim S, Signore M, Pietrosanto M, Helmer-Citterich M, Pallocca M, Fanciulli M, Bruno T, De Nicola F, Corleone G, Di Benedetto A, Ercolani C, Pescarmona E, Pizzuti L, Guidi F, Sperati F, Vitale S, Macchia D, Spada M, Schiavoni G, Mattei F, De Ninno A, Businaro L, Lucarini V, Bracci L, Aricò E, Ziccheddu G, Facchiano F, Rossi S, Sanchez M, Boe A, Biffoni M, De Maria R, Vitale I, Sistigu A. Musella M, et al. Among authors: helmer citterich m. Nat Immunol. 2022 Sep;23(9):1379-1392. doi: 10.1038/s41590-022-01290-3. Epub 2022 Aug 24. Nat Immunol. 2022. PMID: 36002648 Free PMC article.
BEAM web server: a tool for structural RNA motif discovery.
Pietrosanto M, Adinolfi M, Casula R, Ausiello G, Ferrè F, Helmer-Citterich M. Pietrosanto M, et al. Bioinformatics. 2018 Mar 15;34(6):1058-1060. doi: 10.1093/bioinformatics/btx704. Bioinformatics. 2018. PMID: 29095974 Free PMC article.
Modeling cancer drug response through drug-specific informative genes.
Parca L, Pepe G, Pietrosanto M, Galvan G, Galli L, Palmeri A, Sciandrone M, Ferrè F, Ausiello G, Helmer-Citterich M. Parca L, et al. Sci Rep. 2019 Oct 23;9(1):15222. doi: 10.1038/s41598-019-50720-0. Sci Rep. 2019. PMID: 31645597 Free PMC article.
Motif Discovery from CLIP Experiments.
Pietrosanto M, Ausiello G, Helmer-Citterich M. Pietrosanto M, et al. Methods Mol Biol. 2021;2284:43-50. doi: 10.1007/978-1-0716-1307-8_3. Methods Mol Biol. 2021. PMID: 33835436
BRIO: a web server for RNA sequence and structure motif scan.
Guarracino A, Pepe G, Ballesio F, Adinolfi M, Pietrosanto M, Sangiovanni E, Vitale I, Ausiello G, Helmer-Citterich M. Guarracino A, et al. Nucleic Acids Res. 2021 Jul 2;49(W1):W67-W71. doi: 10.1093/nar/gkab400. Nucleic Acids Res. 2021. PMID: 34038531 Free PMC article.
COTAN: scRNA-seq data analysis based on gene co-expression.
Galfrè SG, Morandin F, Pietrosanto M, Cremisi F, Helmer-Citterich M. Galfrè SG, et al. NAR Genom Bioinform. 2021 Aug 11;3(3):lqab072. doi: 10.1093/nargab/lqab072. eCollection 2021 Sep. NAR Genom Bioinform. 2021. PMID: 34396096 Free PMC article.
132 results