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Page 1
The CCP4 suite: integrative software for macromolecular crystallography.
Agirre J, Atanasova M, Bagdonas H, Ballard CB, Baslé A, Beilsten-Edmands J, Borges RJ, Brown DG, Burgos-Mármol JJ, Berrisford JM, Bond PS, Caballero I, Catapano L, Chojnowski G, Cook AG, Cowtan KD, Croll TI, Debreczeni JÉ, Devenish NE, Dodson EJ, Drevon TR, Emsley P, Evans G, Evans PR, Fando M, Foadi J, Fuentes-Montero L, Garman EF, Gerstel M, Gildea RJ, Hatti K, Hekkelman ML, Heuser P, Hoh SW, Hough MA, Jenkins HT, Jiménez E, Joosten RP, Keegan RM, Keep N, Krissinel EB, Kolenko P, Kovalevskiy O, Lamzin VS, Lawson DM, Lebedev AA, Leslie AGW, Lohkamp B, Long F, Malý M, McCoy AJ, McNicholas SJ, Medina A, Millán C, Murray JW, Murshudov GN, Nicholls RA, Noble MEM, Oeffner R, Pannu NS, Parkhurst JM, Pearce N, Pereira J, Perrakis A, Powell HR, Read RJ, Rigden DJ, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick GM, Shelley KL, Simkovic F, Simpkin AJ, Skubak P, Sobolev E, Steiner RA, Stevenson K, Tews I, Thomas JMH, Thorn A, Valls JT, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson KS, Winn MD, Winter G, Wojdyr M, Yamashita K. Agirre J, et al. Among authors: hekkelman ml. Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30. Acta Crystallogr D Struct Biol. 2023. PMID: 37259835 Free PMC article.
Building and rebuilding N-glycans in protein structure models.
van Beusekom B, Wezel N, Hekkelman ML, Perrakis A, Emsley P, Joosten RP. van Beusekom B, et al. Among authors: hekkelman ml. Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):416-425. doi: 10.1107/S2059798319003875. Epub 2019 Apr 4. Acta Crystallogr D Struct Biol. 2019. PMID: 30988258 Free PMC article.
West-Life: A Virtual Research Environment for structural biology.
Morris C, Andreetto P, Banci L, Bonvin AMJJ, Chojnowski G, Cano LD, Carazo JM, Conesa P, Daenke S, Damaskos G, Giachetti A, Haley NEC, Hekkelman ML, Heuser P, Joosten RP, Kouřil D, Křenek A, Kulhánek T, Lamzin VS, Nadzirin N, Perrakis A, Rosato A, Sanderson F, Segura J, Schaarschmidt J, Sobolev E, Traldi S, Trellet ME, Velankar S, Verlato M, Winn M. Morris C, et al. Among authors: hekkelman ml. J Struct Biol X. 2019 Feb 26;1:100006. doi: 10.1016/j.yjsbx.2019.100006. eCollection 2019 Jan-Mar. J Struct Biol X. 2019. PMID: 32647812 Free PMC article.
New restraints and validation approaches for nucleic acid structures in PDB-REDO.
de Vries I, Kwakman T, Lu XJ, Hekkelman ML, Deshpande M, Velankar S, Perrakis A, Joosten RP. de Vries I, et al. Among authors: hekkelman ml. Acta Crystallogr D Struct Biol. 2021 Sep 1;77(Pt 9):1127-1141. doi: 10.1107/S2059798321007610. Epub 2021 Aug 24. Acta Crystallogr D Struct Biol. 2021. PMID: 34473084 Free PMC article.
Analysis and validation of overall N-glycan conformation in Privateer.
Dialpuri JS, Bagdonas H, Atanasova M, Schofield LC, Hekkelman ML, Joosten RP, Agirre J. Dialpuri JS, et al. Among authors: hekkelman ml. Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):462-472. doi: 10.1107/S2059798323003510. Epub 2023 May 23. Acta Crystallogr D Struct Biol. 2023. PMID: 37219590 Free PMC article.
LAHMA: structure analysis through local annotation of homology-matched amino acids.
van Beusekom B, Damaskos G, Hekkelman ML, Salgado-Polo F, Hiruma Y, Perrakis A, Joosten RP. van Beusekom B, et al. Among authors: hekkelman ml. Acta Crystallogr D Struct Biol. 2021 Jan 1;77(Pt 1):28-40. doi: 10.1107/S2059798320014473. Epub 2021 Jan 1. Acta Crystallogr D Struct Biol. 2021. PMID: 33404523 Free PMC article.
A series of PDB related databases for everyday needs.
Joosten RP, te Beek TA, Krieger E, Hekkelman ML, Hooft RW, Schneider R, Sander C, Vriend G. Joosten RP, et al. Among authors: hekkelman ml. Nucleic Acids Res. 2011 Jan;39(Database issue):D411-9. doi: 10.1093/nar/gkq1105. Epub 2010 Nov 11. Nucleic Acids Res. 2011. PMID: 21071423 Free PMC article.
21 results