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Page 1
Dynamic genome evolution in a model fern.
Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, Barry K, Zhang Y, Sessa E, Dhakal RR, Wolf PG, Harkess A, Li FW, Rössner C, Becker A, Gramzow L, Xue D, Wu Y, Tong T, Wang Y, Dai F, Hua S, Wang H, Xu S, Xu F, Duan H, Theißen G, McKain MR, Li Z, McKibben MTW, Barker MS, Schmitz RJ, Stevenson DW, Zumajo-Cardona C, Ambrose BA, Leebens-Mack JH, Grimwood J, Schmutz J, Soltis PS, Soltis DE, Chen ZH. Marchant DB, et al. Among authors: he g. Nat Plants. 2022 Sep;8(9):1038-1051. doi: 10.1038/s41477-022-01226-7. Epub 2022 Sep 1. Nat Plants. 2022. PMID: 36050461 Free PMC article.
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM. Looney B, et al. Among authors: he g. New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892. Epub 2022 Jan 16. New Phytol. 2022. PMID: 34861049 Free article.
Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes.
Zhang J, Shen N, Li C, Xiang X, Liu G, Gui Y, Patev S, Hibbett DS, Barry K, Andreopoulos W, Lipzen A, Riley R, He G, Yan M, Grigoriev IV, Shan Kwan H, Kit Cheung M, Bian Y, Xiao Y. Zhang J, et al. Among authors: he g. J Adv Res. 2021 Sep 28;38:91-106. doi: 10.1016/j.jare.2021.09.008. eCollection 2022 May. J Adv Res. 2021. PMID: 35572413 Free PMC article.
The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Shalev TJ, Gamal El-Dien O, Yuen MMS, Shengqiang S, Jackman SD, Warren RL, Coombe L, van der Merwe L, Stewart A, Boston LB, Plott C, Jenkins J, He G, Yan J, Yan M, Guo J, Breinholt JW, Neves LG, Grimwood J, Rieseberg LH, Schmutz J, Birol I, Kirst M, Yanchuk AD, Ritland C, Russell JH, Bohlmann J. Shalev TJ, et al. Among authors: he g. Genome Res. 2022 Oct;32(10):1952-1964. doi: 10.1101/gr.276358.121. Epub 2022 Sep 15. Genome Res. 2022. PMID: 36109148 Free PMC article.
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.
Ma X, Vanneste S, Chang J, Ambrosino L, Barry K, Bayer T, Bobrov AA, Boston L, Campbell JE, Chen H, Chiusano ML, Dattolo E, Grimwood J, He G, Jenkins J, Khachaturyan M, Marín-Guirao L, Mesterházy A, Muhd DD, Pazzaglia J, Plott C, Rajasekar S, Rombauts S, Ruocco M, Scott A, Tan MP, Van de Velde J, Vanholme B, Webber J, Wong LL, Yan M, Sung YY, Novikova P, Schmutz J, Reusch TBH, Procaccini G, Olsen JL, Van de Peer Y. Ma X, et al. Among authors: he g. Nat Plants. 2024 Feb;10(2):240-255. doi: 10.1038/s41477-023-01608-5. Epub 2024 Jan 26. Nat Plants. 2024. PMID: 38278954
Genome Sequencing.
Yoshinaga Y, Daum C, He G, O'Malley R. Yoshinaga Y, et al. Among authors: he g. Methods Mol Biol. 2018;1775:37-52. doi: 10.1007/978-1-4939-7804-5_4. Methods Mol Biol. 2018. PMID: 29876807
A comparative genomics study of 23 Aspergillus species from section Flavi.
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: he g. Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y. Nat Commun. 2020. PMID: 32107379 Free PMC article.
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Van Goethem MW, Osborn AR, Bowen BP, Andeer PF, Swenson TL, Clum A, Riley R, He G, Koriabine M, Sandor L, Yan M, Daum CG, Yoshinaga Y, Makhalanyane TP, Garcia-Pichel F, Visel A, Pennacchio LA, O'Malley RC, Northen TR. Van Goethem MW, et al. Among authors: he g. Commun Biol. 2021 Nov 18;4(1):1302. doi: 10.1038/s42003-021-02809-4. Commun Biol. 2021. PMID: 34795375 Free PMC article.
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Brown JL, Swift CL, Mondo SJ, Seppala S, Salamov A, Singan V, Henrissat B, Drula E, Henske JK, Lee S, LaButti K, He G, Yan M, Barry K, Grigoriev IV, O'Malley MA. Brown JL, et al. Among authors: he g. Biotechnol Biofuels. 2021 Dec 10;14(1):234. doi: 10.1186/s13068-021-02083-w. Biotechnol Biofuels. 2021. PMID: 34893091 Free PMC article.
6,008 results