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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
de Koning W, Miladi M, Hiltemann S, Heikema A, Hays JP, Flemming S, van den Beek M, Mustafa DA, Backofen R, Grüning B, Stubbs AP. de Koning W, et al. Among authors: hays jp. Gigascience. 2020 Oct 17;9(10):giaa105. doi: 10.1093/gigascience/giaa105. Gigascience. 2020. PMID: 33068114 Free PMC article.
Lessons learnt from the introduction of nanopore sequencing.
Heikema A, de Koning W, Li Y, Stubbs A, Hays JP. Heikema A, et al. Among authors: hays jp. Clin Microbiol Infect. 2020 Oct;26(10):1286-1288. doi: 10.1016/j.cmi.2020.05.035. Epub 2020 Jun 4. Clin Microbiol Infect. 2020. PMID: 32505585 Free article. No abstract available.
The Role of the Respiratory Microbiome and Viral Presence in Lower Respiratory Tract Infection Severity in the First Five Years of Life.
Hoefnagels I, van de Maat J, van Kampen JJA, van Rossum A, Obihara C, Tramper-Stranders GA, Heikema AP, de Koning W, van Wermerskerken AM, Horst-Kreft D, Driessen GJA, Punt J, Smit FJ, Stubbs A, Noordzij JG, Hays JP, Oostenbrink R. Hoefnagels I, et al. Among authors: hays jp. Microorganisms. 2021 Jul 5;9(7):1446. doi: 10.3390/microorganisms9071446. Microorganisms. 2021. PMID: 34361882 Free PMC article.
The diagnostic value of nasal microbiota and clinical parameters in a multi-parametric prediction model to differentiate bacterial versus viral infections in lower respiratory tract infections.
Li Y, van Houten CB, Boers SA, Jansen R, Cohen A, Engelhard D, Kraaij R, Hiltemann SD, Ju J, Fernández D, Mankoc C, González E, de Waal WJ, de Winter-de Groot KM, Wolfs TFW, Meijers P, Luijk B, Oosterheert JJ, Sankatsing SUC, Bossink AWJ, Stein M, Klein A, Ashkar J, Bamberger E, Srugo I, Odeh M, Dotan Y, Boico O, Etshtein L, Paz M, Navon R, Friedman T, Simon E, Gottlieb TM, Pri-Or E, Kronenfeld G, Oved K, Eden E, Stubbs AP, Bont LJ, Hays JP. Li Y, et al. Among authors: hays jp. PLoS One. 2022 Apr 18;17(4):e0267140. doi: 10.1371/journal.pone.0267140. eCollection 2022. PLoS One. 2022. PMID: 35436301 Free PMC article.
Chair/bedside diagnosis of oral and respiratory tract infections, and identification of antibiotic resistances for personalised monitoring and treatment.
Mitsakakis K, Stumpf F, Strohmeier O, Klein V, Mark D, Von Stetten F, Peham JR, Herz C, Tawakoli PN, Wegehaupt F, Attin T, Bostanci N, Bao K, Belibasakis GN, Hays JP, Elshout G, Huisman RC, Klein S, Stubbs AP, Doms L, Wolf A, Rusu V, Goethel S, Binsl T, Michie A, Jancovicova J, Kolar V, Kostka M, Smutny J, Karpisek M, Estephan C, Cocaud C, Zengerle R. Mitsakakis K, et al. Among authors: hays jp. Stud Health Technol Inform. 2016;224:61-6. Stud Health Technol Inform. 2016. PMID: 27225554 Free article.
110 results