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Rosetta in CAPRI rounds 13-19.
Fleishman SJ, Corn JE, Strauch EM, Whitehead TA, Andre I, Thompson J, Havranek JJ, Das R, Bradley P, Baker D. Fleishman SJ, et al. Among authors: havranek jj. Proteins. 2010 Nov 15;78(15):3212-8. doi: 10.1002/prot.22784. Proteins. 2010. PMID: 20597089 Free PMC article.
Protein-DNA binding specificity predictions with structural models.
Morozov AV, Havranek JJ, Baker D, Siggia ED. Morozov AV, et al. Among authors: havranek jj. Nucleic Acids Res. 2005 Oct 24;33(18):5781-98. doi: 10.1093/nar/gki875. Print 2005. Nucleic Acids Res. 2005. PMID: 16246914 Free PMC article.
Exploitation of binding energy for catalysis and design.
Thyme SB, Jarjour J, Takeuchi R, Havranek JJ, Ashworth J, Scharenberg AM, Stoddard BL, Baker D. Thyme SB, et al. Among authors: havranek jj. Nature. 2009 Oct 29;461(7268):1300-4. doi: 10.1038/nature08508. Nature. 2009. PMID: 19865174 Free PMC article.
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.
Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popović Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P. Leaver-Fay A, et al. Among authors: havranek jj. Methods Enzymol. 2011;487:545-74. doi: 10.1016/B978-0-12-381270-4.00019-6. Methods Enzymol. 2011. PMID: 21187238 Free PMC article.
Scientific benchmarks for guiding macromolecular energy function improvement.
Leaver-Fay A, O'Meara MJ, Tyka M, Jacak R, Song Y, Kellogg EH, Thompson J, Davis IW, Pache RA, Lyskov S, Gray JJ, Kortemme T, Richardson JS, Havranek JJ, Snoeyink J, Baker D, Kuhlman B. Leaver-Fay A, et al. Among authors: havranek jj. Methods Enzymol. 2013;523:109-43. doi: 10.1016/B978-0-12-394292-0.00006-0. Methods Enzymol. 2013. PMID: 23422428 Free PMC article.
27 results