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VADR: validation and annotation of virus sequence submissions to GenBank.
Schäffer AA, Hatcher EL, Yankie L, Shonkwiler L, Brister JR, Karsch-Mizrachi I, Nawrocki EP. Schäffer AA, et al. Among authors: hatcher el. BMC Bioinformatics. 2020 May 24;21(1):211. doi: 10.1186/s12859-020-3537-3. BMC Bioinformatics. 2020. PMID: 32448124 Free PMC article.
Virus Variation Resource - improved response to emergent viral outbreaks.
Hatcher EL, Zhdanov SA, Bao Y, Blinkova O, Nawrocki EP, Ostapchuck Y, Schäffer AA, Brister JR. Hatcher EL, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D482-D490. doi: 10.1093/nar/gkw1065. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899678 Free PMC article.
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD. O'Leary NA, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8. Nucleic Acids Res. 2016. PMID: 26553804 Free PMC article.
Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Salimi V, Viegas M, Trento A, Agoti CN, Anderson LJ, Avadhanula V, Bahl J, Bont L, Brister JR, Cane PA, Galiano M, Graham BS, Hatcher EL, Hellferscee O, Henke DM, Hirve S, Jackson S, Keyaerts E, Kragten-Tabatabaie L, Lindstrom S, Nauwelaers I, Nokes DJ, Openshaw PJ, Peret TC, Piedra PA, Ramaekers K, Rector A, Trovão NS, von Gottberg A, Zambon M, Zhang W, Williams TC, Barr IG, Buchholz UJ. Salimi V, et al. Among authors: hatcher el. Emerg Infect Dis. 2021 Jun;27(6):1-9. doi: 10.3201/eid2706.204608. Emerg Infect Dis. 2021. PMID: 34013862 Free PMC article.
Influenza sequence validation and annotation using VADR.
Calhoun VC, Hatcher EL, Yankie L, Nawrocki EP. Calhoun VC, et al. Among authors: hatcher el. bioRxiv [Preprint]. 2024 Mar 25:2024.03.21.585980. doi: 10.1101/2024.03.21.585980. bioRxiv. 2024. PMID: 38712272 Free PMC article. Preprint.
14 results