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#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol.
Dommer A, Casalino L, Kearns F, Rosenfeld M, Wauer N, Ahn SH, Russo J, Oliveira S, Morris C, Bogetti A, Trifan A, Brace A, Sztain T, Clyde A, Ma H, Chennubhotla C, Lee H, Turilli M, Khalid S, Tamayo-Mendoza T, Welborn M, Christensen A, Smith DGA, Qiao Z, Sirumalla SK, O'Connor M, Manby F, Anandkumar A, Hardy D, Phillips J, Stern A, Romero J, Clark D, Dorrell M, Maiden T, Huang L, McCalpin J, Woods C, Gray A, Williams M, Barker B, Rajapaksha H, Pitts R, Gibbs T, Stone J, Zuckerman D, Mulholland A, Miller T 3rd, Jha S, Ramanathan A, Chong L, Amaro R. Dommer A, et al. Among authors: hardy d. bioRxiv [Preprint]. 2021 Nov 15:2021.11.12.468428. doi: 10.1101/2021.11.12.468428. bioRxiv. 2021. PMID: 34816263 Free PMC article. Updated. Preprint.
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action.
Trifan A, Gorgun D, Salim M, Li Z, Brace A, Zvyagin M, Ma H, Clyde A, Clark D, Hardy DJ, Burnley T, Huang L, McCalpin J, Emani M, Yoo H, Yin J, Tsaris A, Subbiah V, Raza T, Liu J, Trebesch N, Wells G, Mysore V, Gibbs T, Phillips J, Chennubhotla SC, Foster I, Stevens R, Anandkumar A, Vishwanath V, Stone JE, Tajkhorshid E, A Harris S, Ramanathan A. Trifan A, et al. Among authors: hardy dj. Int J High Perform Comput Appl. 2022 Nov;36(5-6):603-623. doi: 10.1177/10943420221113513. Epub 2022 Aug 5. Int J High Perform Comput Appl. 2022. PMID: 38464362 Free PMC article.
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics.
Casalino L, Dommer AC, Gaieb Z, Barros EP, Sztain T, Ahn SH, Trifan A, Brace A, Bogetti AT, Clyde A, Ma H, Lee H, Turilli M, Khalid S, Chong LT, Simmerling C, Hardy DJ, Maia JD, Phillips JC, Kurth T, Stern AC, Huang L, McCalpin JD, Tatineni M, Gibbs T, Stone JE, Jha S, Ramanathan A, Amaro RE. Casalino L, et al. Among authors: hardy dj. Int J High Perform Comput Appl. 2021 Sep;35(5):432-451. doi: 10.1177/10943420211006452. Int J High Perform Comput Appl. 2021. PMID: 38603008 Free PMC article.
Application Experiences on a GPU-Accelerated Arm-based HPC Testbed.
Elwasif W, Godoy W, Hagerty N, Harris JA, Hernandez O, Joo B, Kent P, Lebrun-Grandié D, Maccarthy E, Melesse Ver-Gara VG, Messer B, Miller R, Oral S, Bastrakov S, Bussmann M, Debus A, Steiniger K, Stephan J, Widera R, Bryngelson SH, LE Berre H, Radhakrishnan A, Young J, Chandrasekaran S, Ciorba F, Simsek O, Clark K, Spiga F, Hammond J, Stone JE, Hardy D, Keller S, Piccinali JG, Trott C. Elwasif W, et al. Among authors: hardy d. Proc Int Conf High Perform Comput Asia Pac Reg HPC Asia 2023 Workshops (2023). 2023 Feb;2023:35-49. doi: 10.1145/3581576.3581621. Epub 2023 Feb 27. Proc Int Conf High Perform Comput Asia Pac Reg HPC Asia 2023 Workshops (2023). 2023. PMID: 38197035 Free PMC article.
A host-directed oxadiazole compound potentiates antituberculosis treatment via zinc poisoning in human macrophages and in a mouse model of infection.
Maure A, Lawarée E, Fiorentino F, Pawlik A, Gona S, Giraud-Gatineau A, Eldridge MJG, Danckaert A, Hardy D, Frigui W, Keck C, Gutierrez C, Neyrolles O, Aulner N, Mai A, Hamon M, Barreiro LB, Brodin P, Brosch R, Rotili D, Tailleux L. Maure A, et al. Among authors: hardy d. PLoS Biol. 2024 Apr 29;22(4):e3002259. doi: 10.1371/journal.pbio.3002259. eCollection 2024 Apr. PLoS Biol. 2024. PMID: 38683873 Free PMC article.
A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: candidate selection in a preclinical murine model.
Brunet J, Choucha Z, Gransagne M, Tabbal H, Ku M-W, Buchrieser J, Fernandes P, Batalie D, Lopez J, Ma L, Dufour E, Simon E, Hardy D, Petres S, Guinet F, Strick-Marchand H, Monot M, Charneau P, Majlessi L, Duprex WP, Gerke C, Martin A, Escriou N. Brunet J, et al. Among authors: hardy d. J Virol. 2024 Apr 2:e0169323. doi: 10.1128/jvi.01693-23. Online ahead of print. J Virol. 2024. PMID: 38563763 Free article.
Study protocol for a cross-sectional online survey investigating patient preferences and experiences of waiting for elective cardiac surgery.
Russo M, Watson K, Richards K, Olive RR, Krausova B, Kumar R, Burridge J, Goulding L, Chua KC, Hardy D, Vassilios A, Kamran B, Bhudia S, Alia N, Habib K, Sevdalis N, Petrou M. Russo M, et al. Among authors: hardy d. BMJ Open. 2024 Mar 4;14(3):e079692. doi: 10.1136/bmjopen-2023-079692. BMJ Open. 2024. PMID: 38443077 Free article.
878 results