Hardigan AA - Search Results

1

Post-mortem molecular profiling of three psychiatric disorders.

Ramaker RC, Bowling KM, Lasseigne BN, Hagenauer MH, Hardigan AA, Davis NS, Gertz J, Cartagena PM, Walsh DM, Vawter MP, Jones EG, Schatzberg AF, Barchas JD, Watson SJ, Bunney BG, Akil H, Bunney WE, Li JZ, Cooper SJ, Myers RM. Ramaker RC, et al. Among authors: hardigan aa. Genome Med. 2017 Jul 28;9(1):72. doi: 10.1186/s13073-017-0458-5. Genome Med. 2017. PMID: 28754123 Free PMC article.

2

A genome-wide interactome of DNA-associated proteins in the human liver.

Ramaker RC, Savic D, Hardigan AA, Newberry K, Cooper GM, Myers RM, Cooper SJ. Ramaker RC, et al. Among authors: hardigan aa. Genome Res. 2017 Nov;27(11):1950-1960. doi: 10.1101/gr.222083.117. Epub 2017 Oct 11. Genome Res. 2017. PMID: 29021291 Free PMC article.

3

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations.

Ramaker RC, Hardigan AA, Goh ST, Partridge EC, Wold B, Cooper SJ, Myers RM. Ramaker RC, et al. Among authors: hardigan aa. Genome Res. 2020 Jul;30(7):939-950. doi: 10.1101/gr.260463.119. Epub 2020 Jul 2. Genome Res. 2020. PMID: 32616518 Free PMC article.

4

aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.

Alonso A, Lasseigne BN, Williams K, Nielsen J, Ramaker RC, Hardigan AA, Johnston B, Roberts BS, Cooper SJ, Marsal S, Myers RM. Alonso A, et al. Among authors: hardigan aa. Bioinformatics. 2017 Jun 1;33(11):1727-1729. doi: 10.1093/bioinformatics/btx023. Bioinformatics. 2017. PMID: 28108448 Free PMC article.

5

RNA sequencing-based cell proliferation analysis across 19 cancers identifies a subset of proliferation-informative cancers with a common survival signature.

Ramaker RC, Lasseigne BN, Hardigan AA, Palacio L, Gunther DS, Myers RM, Cooper SJ. Ramaker RC, et al. Among authors: hardigan aa. Oncotarget. 2017 Jun 13;8(24):38668-38681. doi: 10.18632/oncotarget.16961. Oncotarget. 2017. PMID: 28454104 Free PMC article.

6

Pooled CRISPR screening in pancreatic cancer cells implicates co-repressor complexes as a cause of multiple drug resistance via regulation of epithelial-to-mesenchymal transition.

Ramaker RC, Hardigan AA, Gordon ER, Wright CA, Myers RM, Cooper SJ. Ramaker RC, et al. Among authors: hardigan aa. BMC Cancer. 2021 May 29;21(1):632. doi: 10.1186/s12885-021-08388-1. BMC Cancer. 2021. PMID: 34049503 Free PMC article.

7

Discovery and Validation of Circulating Biomarkers of Colorectal Adenoma by High-Depth Small RNA Sequencing.

Roberts BS, Hardigan AA, Moore DE, Ramaker RC, Jones AL, Fitz-Gerald MB, Cooper GM, Wilcox CM, Kimberly RP, Myers RM. Roberts BS, et al. Among authors: hardigan aa. Clin Cancer Res. 2018 May 1;24(9):2092-2099. doi: 10.1158/1078-0432.CCR-17-1960. Epub 2018 Feb 28. Clin Cancer Res. 2018. PMID: 29490987 Free PMC article.

8

CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries.

Hardigan AA, Roberts BS, Moore DE, Ramaker RC, Jones AL, Myers RM. Hardigan AA, et al. Nucleic Acids Res. 2019 Aug 22;47(14):e84. doi: 10.1093/nar/gkz425. Nucleic Acids Res. 2019. PMID: 31165880 Free PMC article.

9

Occupancy maps of 208 chromatin-associated proteins in one human cell type.

Partridge EC, Chhetri SB, Prokop JW, Ramaker RC, Jansen CS, Goh ST, Mackiewicz M, Newberry KM, Brandsmeier LA, Meadows SK, Messer CL, Hardigan AA, Coppola CJ, Dean EC, Jiang S, Savic D, Mortazavi A, Wold BJ, Myers RM, Mendenhall EM. Partridge EC, et al. Among authors: hardigan aa. Nature. 2020 Jul;583(7818):720-728. doi: 10.1038/s41586-020-2023-4. Epub 2020 Jul 29. Nature. 2020. PMID: 32728244 Free PMC article.

10

Decoding transcriptional enhancers: Evolving from annotation to functional interpretation.

Engel KL, Mackiewicz M, Hardigan AA, Myers RM, Savic D. Engel KL, et al. Among authors: hardigan aa. Semin Cell Dev Biol. 2016 Sep;57:40-50. doi: 10.1016/j.semcdb.2016.05.014. Epub 2016 May 22. Semin Cell Dev Biol. 2016. PMID: 27224938 Free PMC article. Review.

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