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In silico design of ligand triggered RNA switches.
Findeiß S, Hammer S, Wolfinger MT, Kühnl F, Flamm C, Hofacker IL. Findeiß S, et al. Among authors: hammer s. Methods. 2018 Jul 1;143:90-101. doi: 10.1016/j.ymeth.2018.04.003. Epub 2018 Apr 13. Methods. 2018. PMID: 29660485
RNAblueprint: flexible multiple target nucleic acid sequence design.
Hammer S, Tschiatschek B, Flamm C, Hofacker IL, Findeiß S. Hammer S, et al. Bioinformatics. 2017 Sep 15;33(18):2850-2858. doi: 10.1093/bioinformatics/btx263. Bioinformatics. 2017. PMID: 28449031 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: RNAblueprint , Python implementations and benchmark datasets are available at github: https://github.com/ViennaRNA . CONTACT: s.hammer@univie.ac.at, ivo@tbi.univie.ac.at or sven@tbi.univie.ac.at. ...
AVAILABILITY AND IMPLEMENTATION: RNAblueprint , Python implementations and benchmark datasets are available at github: https://github.com/Vi …
Advanced Design of Structural RNAs Using RNARedPrint.
Ponty Y, Hammer S, Yao HT, Will S. Ponty Y, et al. Among authors: hammer s. Methods Mol Biol. 2021;2284:1-15. doi: 10.1007/978-1-0716-1307-8_1. Methods Mol Biol. 2021. PMID: 33835434
Thermodynamic and kinetic folding of riboswitches.
Badelt S, Hammer S, Flamm C, Hofacker IL. Badelt S, et al. Among authors: hammer s. Methods Enzymol. 2015;553:193-213. doi: 10.1016/bs.mie.2014.10.060. Epub 2015 Feb 12. Methods Enzymol. 2015. PMID: 25726466
Computational design of RNAs with complex energy landscapes.
Höner zu Siederdissen C, Hammer S, Abfalter I, Hofacker IL, Flamm C, Stadler PF. Höner zu Siederdissen C, et al. Among authors: hammer s. Biopolymers. 2013 Dec;99(12):1124-36. doi: 10.1002/bip.22337. Biopolymers. 2013. PMID: 23818234
Serum proteomics reveals hemophagocytic lymphohistiocytosis-like phenotype in a subset of patients with multisystem inflammatory syndrome in children.
Tulling AJ, Holierhoek MG, Jansen-Hoogendijk AM, Hoste L, Haerynck F, Tavernier SJ, Oostenbrink R, Buysse CMP, Bannier MAGE, Bekhof J, Breukels M, Hammer SC, Jacobs MAM, Kamps AWA, van der Linden JW, Lebon A, Oudshoorn JH, Tramper-Stranders GA, Vastert SJ, Wieringa JW, Terheggen-Lagro SWJ, Wildenbeest JG, von Asmuth EGJ, van den Akker EB, van Gijn ME, Lugthart G, Buddingh EP. Tulling AJ, et al. Among authors: hammer sc. Clin Immunol. 2024 May 12;264:110252. doi: 10.1016/j.clim.2024.110252. Online ahead of print. Clin Immunol. 2024. PMID: 38744408 Free article.
708 results