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Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.
Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS, Eguiluz M, Guo X, Guzman F, Hackett CA, Hamilton JP, Li G, Li Y, Lozano R, Maass A, Marshall D, Martinez D, McLean K, Mejía N, Milne L, Munive S, Nagy I, Ponce O, Ramirez M, Simon R, Thomson SJ, Torres Y, Waugh R, Zhang Z, Huang S, Visser RG, Bachem CW, Sagredo B, Feingold SE, Orjeda G, Veilleux RE, Bonierbale M, Jacobs JM, Milbourne D, Martin DM, Bryan GJ. Sharma SK, et al. Among authors: hamilton jp. G3 (Bethesda). 2013 Nov 6;3(11):2031-47. doi: 10.1534/g3.113.007153. G3 (Bethesda). 2013. PMID: 24062527 Free PMC article.
Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum.
Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches DS, Jiang J, Veilleux RE, Buell CR. Hardigan MA, et al. Among authors: hamilton jp. Plant Cell. 2016 Feb;28(2):388-405. doi: 10.1105/tpc.15.00538. Epub 2016 Jan 15. Plant Cell. 2016. PMID: 26772996 Free PMC article.
Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato.
Hardigan MA, Laimbeer FPE, Newton L, Crisovan E, Hamilton JP, Vaillancourt B, Wiegert-Rininger K, Wood JC, Douches DS, Farré EM, Veilleux RE, Buell CR. Hardigan MA, et al. Among authors: hamilton jp. Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E9999-E10008. doi: 10.1073/pnas.1714380114. Epub 2017 Oct 30. Proc Natl Acad Sci U S A. 2017. PMID: 29087343 Free PMC article.
Genome sequence of M6, a diploid inbred clone of the high-glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity.
Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR. Leisner CP, et al. Among authors: hamilton jp. Plant J. 2018 May;94(3):562-570. doi: 10.1111/tpj.13857. Epub 2018 Mar 22. Plant J. 2018. PMID: 29405524 Free article.
Reply to Huang et al.: Avoiding "one-size-fits-all" approaches to variant discovery.
Hardigan MA, Laimbeer FPE, Hamilton JP, Vaillancourt B, Douches DS, Farré EM, Veilleux RE, Buell CR. Hardigan MA, et al. Among authors: hamilton jp. Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6394-E6395. doi: 10.1073/pnas.1807622115. Epub 2018 Jun 22. Proc Natl Acad Sci U S A. 2018. PMID: 29934402 Free PMC article. No abstract available.
Haplotype-resolved genome analyses of a heterozygous diploid potato.
Zhou Q, Tang D, Huang W, Yang Z, Zhang Y, Hamilton JP, Visser RGF, Bachem CWB, Robin Buell C, Zhang Z, Zhang C, Huang S. Zhou Q, et al. Among authors: hamilton jp. Nat Genet. 2020 Oct;52(10):1018-1023. doi: 10.1038/s41588-020-0699-x. Epub 2020 Sep 28. Nat Genet. 2020. PMID: 32989320 Free PMC article.
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
Hoopes G, Meng X, Hamilton JP, Achakkagari SR, de Alves Freitas Guesdes F, Bolger ME, Coombs JJ, Esselink D, Kaiser NR, Kodde L, Kyriakidou M, Lavrijssen B, van Lieshout N, Shereda R, Tuttle HK, Vaillancourt B, Wood JC, de Boer JM, Bornowski N, Bourke P, Douches D, van Eck HJ, Ellis D, Feldman MJ, Gardner KM, Hopman JCP, Jiang J, De Jong WS, Kuhl JC, Novy RG, Oome S, Sathuvalli V, Tan EH, Ursum RA, Vales MI, Vining K, Visser RGF, Vossen J, Yencho GC, Anglin NL, Bachem CWB, Endelman JB, Shannon LM, Strömvik MV, Tai HH, Usadel B, Buell CR, Finkers R. Hoopes G, et al. Among authors: hamilton jp. Mol Plant. 2022 Mar 7;15(3):520-536. doi: 10.1016/j.molp.2022.01.003. Epub 2022 Jan 10. Mol Plant. 2022. PMID: 35026436 Free article.
239 results