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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
Genome Biol. 2019.
PMID: 31744546
Free PMC article.
Identifying antimicrobial peptides using word embedding with deep recurrent neural networks.
Hamid MN, Friedberg I.
Hamid MN, et al.
Bioinformatics. 2019 Jun 1;35(12):2009-2016. doi: 10.1093/bioinformatics/bty937.
Bioinformatics. 2019.
PMID: 30418485
Free PMC article.
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Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains.
Fields FR, Freed SD, Carothers KE, Hamid MN, Hammers DE, Ross JN, Kalwajtys VR, Gonzalez AJ, Hildreth AD, Friedberg I, Lee SW.
Fields FR, et al. Among authors: hamid mn.
Drug Dev Res. 2020 Feb;81(1):43-51. doi: 10.1002/ddr.21601. Epub 2019 Sep 4.
Drug Dev Res. 2020.
PMID: 31483516
Free PMC article.
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Chikungunya Virus in Febrile Humans and Aedes aegypti Mosquitoes, Yucatan, Mexico.
Cigarroa-Toledo N, Blitvich BJ, Cetina-Trejo RC, Talavera-Aguilar LG, Baak-Baak CM, Torres-Chablé OM, Hamid MN, Friedberg I, González-Martinez P, Alonzo-Salomon G, Rosado-Paredes EP, Rivero-Cárdenas N, Reyes-Solis GC, Farfan-Ale JA, Garcia-Rejon JE, Machain-Williams C.
Cigarroa-Toledo N, et al. Among authors: hamid mn.
Emerg Infect Dis. 2016 Oct;22(10):1804-7. doi: 10.3201/eid2210.152087. Epub 2016 Oct 15.
Emerg Infect Dis. 2016.
PMID: 27347760
Free PMC article.
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MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities.
Cao L, Gurevich A, Alexander KL, Naman CB, Leão T, Glukhov E, Luzzatto-Knaan T, Vargas F, Quinn R, Bouslimani A, Nothias LF, Singh NK, Sanders JG, Benitez RAS, Thompson LR, Hamid MN, Morton JT, Mikheenko A, Shlemov A, Korobeynikov A, Friedberg I, Knight R, Venkateswaran K, Gerwick WH, Gerwick L, Dorrestein PC, Pevzner PA, Mohimani H.
Cao L, et al. Among authors: hamid mn.
Cell Syst. 2019 Dec 18;9(6):600-608.e4. doi: 10.1016/j.cels.2019.09.004. Epub 2019 Oct 16.
Cell Syst. 2019.
PMID: 31629686
Free PMC article.
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Effect of different stent configurations using Lattice Boltzmann method and particles image velocimetry on artery bifurcation aneurysm problem.
Mokhtar NH, Abas A, Razak NA, Hamid MNA, Teong SL.
Mokhtar NH, et al. Among authors: hamid mna.
J Theor Biol. 2017 Nov 21;433:73-84. doi: 10.1016/j.jtbi.2017.08.016. Epub 2017 Aug 24.
J Theor Biol. 2017.
PMID: 28844907
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Science-policy interface: beyond assessments.
Hulme M, Mahony M, Beck S, Görg C, Hansjürgens B, Hauck J, Nesshöver C, Paulsch A, Vandewalle M, Wittmer H, Böschen S, Bridgewater P, Diaw MC, Fabre P, Figueroa A, Heong KL, Korn H, Leemans R, Lövbrand E, Hamid MN, Monfreda C, Pielke R Jr, Settele J, Winter M, Vadrot AB, van den Hove S, van der Sluijs JP.
Hulme M, et al. Among authors: hamid mn.
Science. 2011 Aug 5;333(6043):697-8. doi: 10.1126/science.333.6043.697.
Science. 2011.
PMID: 21817033
No abstract available.
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